Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01519 ATGCCAGGAAAGTATCAAGTGGCATGTTCCAGTATGAGAGCAAAGAGTCTGATAAGTAAGAGGAGGCTTAGCATTAGAGGGAAATTGAGGAAGATGATGAAGTGTATACGTTCAAGAGAGCAGTTAACTGTAGATGAAATGGGTTATTCATCAGAGTCCCTAGCAACAAGGGACTATTCAGCAAGTGGTGGTTATTCTTCCCGTCCTGGTGAAAATGAAACAAAGTTGGACAATAGCAACATTGAAGAAGCAGAATCTTCTCTTCGTGAAAGTGGTTATTTAAACTATGAGGAAGCCAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGTAATATCGAAGCTGCACTTCATGTATTTGAAGGAATAGATATTGCTGCTGTCATTCCCAAGATGAAATTTTCTATATCTAGAAGATGTGAAACCAATAGACGCCGTTCACAAAGTGATGCAGTGCCTCCTATGTCGATGCATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAGGCTAAATCATTGCAGACTCTTGGAAGGTTTCAAGATGCTGCTCTGTCATGCAAAACTATTTTAGACACCATTGAATCTTCATTGCCAGAAGGCTGGCCTGAAAACTTTGTTTCAGACTGTAAATTACAAGAGACTGTAACAAATTCTGTAGAACTGCTTCCAGAGTTGTGGAAGCTTGCTGGCTCTCCTCAAGATGTTATTACATCATTTAGGCGTGCCTTGCTTTATCGTTGGAATCTTGACATTGAAGCCACATCAAGAATACAAAAGGAATTTGCTTTGTTTCTTTTGTATAGTGGTTGTGAAGCAAGCCCTCCTGCTCTCCGTTCTCAGTTGGACGGTTCTTTTGTGCCAAGAAACAACATAGAAGAGGCTGTTCTTCTGCTTCTGATTCTGCTGAGAAAATATGTTCTTGGAAGCATTGTATGGGACCCTTCAATAATTGATCACCTTTCTTTTGCTCTAAGTGTTTCTGGGGAATTCATGACTCTGGCTCAACAGGTTGAGGAATTGCTTCCAGAAACCATGGAAAGAAAAGAAAGATATTATACTCTAGCTCTTTGTTACTGTGGGGAAGGTGAGCCTATGACTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAACTCGGAGAGCATACAGGAATTGCTTCTAGCTTCAAAAATTTGTGCAGACAACATGGTATGTGTTGAAGATGGAATAAAATATTCTTGTAAAGCCATTTCTCAGTTGTATGGAAAATGCATGCAAATGGTAGCTATTGCAAATTGCTTACTAGGTGTTCTACTATCAGCAAAATCCAGGTCAGTTGCTTCTGAATCGGAGAAGGTTTCAATGCAGTCTGAAGCACTCAGTGCTCTAAAAGCTGCTCAGAGAATGACAAGGGAAAATGATCCATACATTGTCTTTCATCTTTGTCTAGAATATGCTGAGCAGAGGAAGTTGAGCATTGCTTTTTATTATGCAAAGAAACTGGTTAAGCTGGAGGGTGGATCTAGTATTACTGGATATATACTACTAGCACGGATTTTTTCAGCTCAAAAACAATTTGTTGATGCAGAGATTGTTATTGATGCTGCTCTAGATCAAAGTGGAAAATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAACTTCGGATTGCGCAAGGAAAATTAAAGCATGCAGTGGAGACATATACTTTTCTTCTTGCTGTTCTTCAAGTCCAAAATAAAAGTTTAGGCGTTGCAAATAAGGTTGTGAAGTGTAAGGGAAACCGTGACAGAAGACTGGAAATGGAAATATGGCATGATTTAGCCAATGTGTACACAACCTTGTCACAGTGGCGGGATGCTGAAGTTTGTCTTGCAAAATCTCAAGCTATTAATCCTTATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTTTGAAGCCAGAGGTCTTCATCAGGAAGCTCTGCAATCATTTAGAAAAGCATTGGATATTGAGCCCAACCATGTGCCAAGTTTGATATCCACGGCCTGTGTTCTCAGACAGCTTGGTGGTCAATCATCTTCAATTGTTAGAAGCCTTCTCACTGATGCACTAAGGCTTGACAGAACAAACCCATCTGCATGGTACAATCTTGGACTGCTCTACAAAGCTGATATGGGAACATCAGCACTGGAAGCTATTGAATGCTTTGAGGCAGCAGTTCTTCTTGAAGAATCTTCTCCTATTGAACCCTTTAGATAA 2232 0.4001 MPGKYQVACSSMRAKSLISKRRLSIRGKLRKMMKCIRSREQLTVDEMGYSSESLATRDYSASGGYSSRPGENETKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKFSISRRCETNRRRSQSDAVPPMSMHAVSLLLEAVFLKAKSLQTLGRFQDAALSCKTILDTIESSLPEGWPENFVSDCKLQETVTNSVELLPELWKLAGSPQDVITSFRRALLYRWNLDIEATSRIQKEFALFLLYSGCEASPPALRSQLDGSFVPRNNIEEAVLLLLILLRKYVLGSIVWDPSIIDHLSFALSVSGEFMTLAQQVEELLPETMERKERYYTLALCYCGEGEPMTALDLLRNFLNNRENSESIQELLLASKICADNMVCVEDGIKYSCKAISQLYGKCMQMVAIANCLLGVLLSAKSRSVASESEKVSMQSEALSALKAAQRMTRENDPYIVFHLCLEYAEQRKLSIAFYYAKKLVKLEGGSSITGYILLARIFSAQKQFVDAEIVIDAALDQSGKWDQGELLRTKAKLRIAQGKLKHAVETYTFLLAVLQVQNKSLGVANKVVKCKGNRDRRLEMEIWHDLANVYTTLSQWRDAEVCLAKSQAINPYSASRWHSTGLLFEARGLHQEALQSFRKALDIEPNHVPSLISTACVLRQLGGQSSSIVRSLLTDALRLDRTNPSAWYNLGLLYKADMGTSALEAIECFEAAVLLEESSPIEPFR* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01519 743 SMART tpr_5 598 631 IPR019734 GO:0005515
Rops6g01519 743 SMART tpr_5 702 737 IPR019734 GO:0005515
Rops6g01519 743 SMART tpr_5 164 197 IPR019734 GO:0005515
Rops6g01519 743 SMART tpr_5 632 665 IPR019734 GO:0005515
Rops6g01519 743 SMART tpr_5 506 539 IPR019734 GO:0005515
Rops6g01519 743 MobiDBLite consensus disorder prediction 59 74 - -
Rops6g01519 743 Gene3D Tetratricopeptide repeat domain 583 740 IPR011990 GO:0005515
Rops6g01519 743 Pfam Tetratricopeptide repeat 635 665 IPR019734 GO:0005515
Rops6g01519 743 SUPERFAMILY TPR-like 543 713 IPR011990 GO:0005515
Rops6g01519 743 Gene3D Tetratricopeptide repeat domain 72 578 IPR011990 GO:0005515
Rops6g01519 743 MobiDBLite consensus disorder prediction 59 82 - -
Rops6g01519 743 ProSiteProfiles TPR repeat profile. 632 665 IPR019734 GO:0005515
Rops6g01519 743 SUPERFAMILY TPR-like 351 570 IPR011990 GO:0005515
Rops6g01519 743 PANTHER PROTEIN NPG1 33 743 IPR043376 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01519 Rops-Chr6 31861134 31865519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01519 25 743 Calmodulin-binding Proteins AT4G28600 54.297 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01519 K21843 - gmx:100789469 1248.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01519 6 31861134 31865519 Rops6g01519 6 31861134 31865519 ECH