Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01463 ATGAGTGAAGACCTCAAGCGAGACTACGTCGTTTTGGAAGAGATCGGCCGAGGAAGATTCGGCATCGTTTTCCGGTGCACCTCCGTGAACTCCGACGAATCCTTTGCCGTCAAATCCATCGATAAAGTGGCCATAACCGCCGGTGGAGACTCCCTTGACGCCCAATGCCTATTAACGGAGCCAAAGATTCTTCAGCTTCTCTCTCCACACCCTCACATCGTTAACCTCCACAACCTCTATGAGGATGACACAGACCTCCATATGGTACTTGACCTGTGTTACGAATCGGATTTTCACAACCGAGTTATGTCCGAACCCGAAGCTGCTTCCGTAATGTACCAGCTCATGCAAGCTGTGGCTCACTGTCACCGGCTCGGCGTGGCACACCGAGACATAAAGCCCGACAACATTCTTTTCGACGAGGAGAATGGGCTCAAGCTAGCCGATCTCGGCTCGGCTGAGGTTTTCAAGGAGGGCGAGCCGATGAGTGGGGTGGTGGGGACGCCGCATTACGTGGCGCCGGAGGTACTCGCCGGAAGGGATTACACCGAGAAGGTCGACGTGTGGAGCGCCGGTGTCGTTTTGTATGGAATGTTGGCTGGGTTTCCGCCGTTTAGGGGTGATTCTCCGGTTGAGATTTTTGAGGCTGTCATTCGAGCCAATTTGAGGTTCCCGACAAGAGTTTTTTGCTCCGTGTCATCGGCGGCGAAGGATCTGCTTCGTAGAATGCTTTGTAAAGATGTTTCTAGAAGGTTCTCTGCAGAACAAGTTCTGAGGCACCCATGGTTTAGCATTGCTGAACAGAACATACCAACAGAAACAGAGTGA 828 0.5242 MSEDLKRDYVVLEEIGRGRFGIVFRCTSVNSDESFAVKSIDKVAITAGGDSLDAQCLLTEPKILQLLSPHPHIVNLHNLYEDDTDLHMVLDLCYESDFHNRVMSEPEAASVMYQLMQAVAHCHRLGVAHRDIKPDNILFDEENGLKLADLGSAEVFKEGEPMSGVVGTPHYVAPEVLAGRDYTEKVDVWSAGVVLYGMLAGFPPFRGDSPVEIFEAVIRANLRFPTRVFCSVSSAAKDLLRRMLCKDVSRRFSAEQVLRHPWFSIAEQNIPTETE* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01463 275 Pfam Protein kinase domain 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01463 275 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01463 275 SUPERFAMILY Protein kinase-like (PK-like) 6 264 IPR011009 -
Rops6g01463 275 FunFam Maternal embryonic leucine zipper kinase 2 275 - -
Rops6g01463 275 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Rops6g01463 275 PANTHER SERINE/THREONINE-PROTEIN KINASE 3 268 - -
Rops6g01463 275 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Rops6g01463 275 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01463 275 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops6g01463 275 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Rops6g01463 275 CDD STKc_CAMK 8 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01463 Rops-Chr6 30635409 30636937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01463 3 263 EF-hand Containing Proteins AT1G50700 40.520 5.22e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops6g01463 Pkinase 8.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01463 K08794 - gmx:547731 490.345