Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01460 ATGGAACGTGGGGTTCTTGATGGTATCATCAATAAGCTGCTTGAAGTTAGAGGAAGACCCGAGAAACAGGTGCAGCTTTCTGAGGCAGAGATCAAGCAGCTTTGTCTTGTTTCCAAGGGTATCTTCTTAAAACAGCCCAACCTCTTGGAACTCGAAGCACCAATTAAGATCTGTGGTGATGTCCATGGTCAATACTCTGATCTTCTGAGACTTTTTGAGTATGGTGGATTGCCTCCTCGTTTCAATTATTTATTTTTAGGGGATTATGTTGATCGTGGAAAGCAAAGTCTGGAGACAATATGTCTTCTTCTGGCATATAAAATAAAATACCCTGAAAACTTTTTCCTTCTGAGGGGAAACCATGAATGTGCTTCCATAAACCGTATCTATGGATTTTATGATGAATGTAAAAGGAGATTCAACGTCAAGCTCTGGAAACTTTTCACAGATTGTTTCAACTGTTTGCCTGTGGCAGCTCTCATTGATGAAAAGATAATATGTATGCATGGTGGACTCTCTCCTGAATTACACAATTTAAATCAGATAAGGAGTTTGACACGTCCTTGTGAAGTCCCTGAAACTGGTCTATTATGCGACCTCCTTTGGTCTGATCCTAGTAGTGATATTCAAGGTTGGGGAGAAAATGAACGTGGAGTTTCATATACTTTTGGTGCTGATAGGGTGACAGAATTTCTTCGAAAGCATGATCTTGATTTGATTTGCAGAGCTCACCAGGTTGTGGAAGATGGATATGAATTCTTTGCTAACAGACAACTTGTAACAATCTTTTCTGCACCTAATTACTGTGGAGAGTTTGACAATGCTGGTGCTATGATGACTGTTGGTGAGACACTTGTGTGCTCTTTTCAAATATTGAAGCCTCTAGATAAAAGGCCTAAGTTTAGCTTTGGGAGCACAACTACAGTTAAGCCTAGTACTCCGAAAAAAAACAAGCAAGCATTTTTTGGTGGTAAAGCATGA 981 0.3986 MERGVLDGIINKLLEVRGRPEKQVQLSEAEIKQLCLVSKGIFLKQPNLLELEAPIKICGDVHGQYSDLLRLFEYGGLPPRFNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVKLWKLFTDCFNCLPVAALIDEKIICMHGGLSPELHNLNQIRSLTRPCEVPETGLLCDLLWSDPSSDIQGWGENERGVSYTFGADRVTEFLRKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMTVGETLVCSFQILKPLDKRPKFSFGSTTTVKPSTPKKNKQAFFGGKA* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01460 326 MobiDBLite consensus disorder prediction 304 326 - -
Rops6g01460 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Rops6g01460 326 FunFam Serine/threonine-protein phosphatase 1 303 - -
Rops6g01460 326 Pfam Serine-threonine protein phosphatase N-terminal domain 6 52 IPR031675 -
Rops6g01460 326 SUPERFAMILY Metallo-dependent phosphatases 18 298 IPR029052 -
Rops6g01460 326 CDD MPP_PP1_PPKL 5 294 - -
Rops6g01460 326 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Rops6g01460 326 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Rops6g01460 326 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Rops6g01460 326 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Rops6g01460 326 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Rops6g01460 326 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Rops6g01460 326 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Rops6g01460 326 Gene3D - 2 305 IPR029052 -
Rops6g01460 326 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Rops6g01460 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 10 298 - -
Rops6g01460 326 SMART pp2a_7 26 296 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01460 Rops-Chr6 30563142 30568334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01460 33 239 Calmodulin-binding Proteins AT5G63870 31.452 4.53e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01460 K06269 - gmx:100791655 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04156 8 83701050 83709881 Rops6g01460 6 30563142 30568334 ECH
Rops6g01460 6 30563142 30568334 Rops6g01460 6 30563142 30568334 ECH