Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01452 ATGGATTCTTCATTAACTTTCAATTCATCCAATTCTGAATTTTCCTCTGAATCTTCCTCCTTTGAGATGGATTGGCTTCCTTTCAACGAGAATGATCCTGAGGAGATGCTTCTTTATGGCATGATTGCTGATGCCAATACCCTCCATAGCCAAGAAACCAGCAAGAGGGTGAAGGAAGAGGAGGTGAGTTCTGAGGAAAATGGTGGAAGGAAGGAGAAGTATCGAGGTGTAAGAAGAAGGCCATGGGGGAAGTTTGCTGCAGAGATTAGAGATTCGACAAGGAATGGGACGAGGGTGTGGTTGGGGACTTTTGATAGTGCTGAAGCTGCTGCTTTGGCTTATGATCAAGCTGCTTTTTCCATGAGGGGTTCTTCGGCAATACTCAATTTCCCTGTTGAGATTGTTAGGGAATCGCTTAGGGAGATGAATTATGTGCATGGCTCTGAAGAAGGGTGTTCCCCTGTTGTTGCTCTCAAGAGGAAGCACTCCTTGAGAAGGAAAATTGGTGTTAAGAAGAATAAAGAAAGTCATGTGAGGAATCATAGGGTGGTGGACAATGCGGTTGTGTTGGAAGATCTTGGTTCTGATTACTTGGAACAATTGTTGATGTCCTCTGATGAGAATCGTTCTGCTTGGTGA 639 0.4429 MDSSLTFNSSNSEFSSESSSFEMDWLPFNENDPEEMLLYGMIADANTLHSQETSKRVKEEEVSSEENGGRKEKYRGVRRRPWGKFAAEIRDSTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVEIVRESLREMNYVHGSEEGCSPVVALKRKHSLRRKIGVKKNKESHVRNHRVVDNAVVLEDLGSDYLEQLLMSSDENRSAW* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01452 212 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Rops6g01452 212 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Rops6g01452 212 Gene3D AP2/ERF domain 72 133 IPR036955 GO:0003700|GO:0006355
Rops6g01452 212 MobiDBLite consensus disorder prediction 1 20 - -
Rops6g01452 212 FunFam Ethylene-responsive transcription factor 2 72 133 - -
Rops6g01452 212 CDD AP2 73 132 IPR001471 GO:0003700|GO:0006355
Rops6g01452 212 PANTHER DNA-BINDING DOMAIN 25 204 IPR044808 GO:0003700|GO:0009873
Rops6g01452 212 MobiDBLite consensus disorder prediction 51 75 - -
Rops6g01452 212 SUPERFAMILY DNA-binding domain 73 133 IPR016177 GO:0003677
Rops6g01452 212 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Rops6g01452 212 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Rops6g01452 212 MobiDBLite consensus disorder prediction 50 75 - -
Rops6g01452 212 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01452 Rops-Chr6 30349772 30350664 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01452 26 212 AP2-EREBP Transcription Factor Family AT3G23240 62.827 9.36e-74 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01452 AP2 5.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01452 K14516 - gmx:100790598 255.758
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g04159 8 83744807 83745415 Rops6g01452 6 30349772 30350664 ECH
Rops8g03092 8 68671948 68672670 Rops6g01452 6 30349772 30350664 ECH
Rops6g01242 6 27481692 27482348 Rops6g01452 6 30349772 30350664 ECH
Rops6g01452 6 30349772 30350664 Rops6g01452 6 30349772 30350664 ECH