Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01449 ATGGAAGACCACCAAAAGGGGAAGCATGGGAAGGAGGAGAAGGCAAGGGAAGAGGTCCGGTACCGTGGTGTCCGACGGCGGCCGTGGGGGAAGTATGCGGCGGAGATAAGAGATCCATCAAAGCAAGGGGCAAGGCTTTGGTTGGGGACATTTGATACTGCTGAAGAAGCAGCTAGAGCTTATGATAGAGCAGCTTTCAACTTGAGGGGTCATCTTGCAATTCTCAATTTTCCTAATGAGTACTATGCTCAAATAAGGGGCTCACCACCATATCCACCTCATTTAGCATCAACCTATTCCTCATCTTCTTCTCATGCCAGTGGCAGTAGCGGTTCTTCTCATGTAATTGAGTTTGAGTGTTTGGATGATAAGGTGTTGGAGGACCTTCTTGAGTCAGAGGAGAAGGAGAAGAAGAAGAAAAAGAAGTGA 429 0.4779 MEDHQKGKHGKEEKAREEVRYRGVRRRPWGKYAAEIRDPSKQGARLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPNEYYAQIRGSPPYPPHLASTYSSSSSHASGSSGSSHVIEFECLDDKVLEDLLESEEKEKKKKKK* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01449 142 MobiDBLite consensus disorder prediction 94 112 - -
Rops6g01449 142 Pfam AP2 domain 20 71 IPR001471 GO:0003700|GO:0006355
Rops6g01449 142 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Rops6g01449 142 PANTHER DNA-BINDING DOMAIN 10 136 IPR044808 GO:0003700|GO:0009873
Rops6g01449 142 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Rops6g01449 142 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Rops6g01449 142 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Rops6g01449 142 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Rops6g01449 142 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Rops6g01449 142 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Rops6g01449 142 MobiDBLite consensus disorder prediction 86 112 - -
Rops6g01449 142 Gene3D AP2/ERF domain 19 80 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01449 Rops-Chr6 30234808 30235236 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01449 18 137 AP2-EREBP Transcription Factor Family AT3G23230 65.854 2.08e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01449 AP2 4.7e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01449 - - gmx:100793703 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01449 6 30234808 30235236 Rops6g01449 6 30234808 30235236 ECH