Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01448 ATGGATGGAGAAGGATCAAGGGGAAGGGGCAAGGAGGATGCCGGGGATGTCCGGTATCGCGGTGTTCGCCGACGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGACTCCACAAGGCAGGGTCAAAGGGTGTGGCTGGGAACTTTCAACACTGCTGAGGAAGCAGCCAGAGCCTATGACAGAGCTGCTTATGCTATGAGAGGTTCATTTGCAATCCTTAACTTCCCAAATGAGTACCCTATGACAGCTGGTGCTGGAGCCACTTCTGCTTCATCATCCTCATCCTCTTCAAGGCATGCAAATGTGGAGGGTAGAGGAAGAAGTGAGCAAGGAAGACAAGTGTTTGAGTTTGAGTACTTGGATGACAAAGTGTTGGAGGAGCTTCTTGATTTTGAAGAGAAGAAAAATAAGGGACACTGA 420 0.5071 MDGEGSRGRGKEDAGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYDRAAYAMRGSFAILNFPNEYPMTAGAGATSASSSSSSSRHANVEGRGRSEQGRQVFEFEYLDDKVLEELLDFEEKKNKGH* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01448 139 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Rops6g01448 139 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Rops6g01448 139 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Rops6g01448 139 MobiDBLite consensus disorder prediction 84 101 - -
Rops6g01448 139 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Rops6g01448 139 MobiDBLite consensus disorder prediction 82 109 - -
Rops6g01448 139 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Rops6g01448 139 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Rops6g01448 139 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Rops6g01448 139 PANTHER DNA-BINDING DOMAIN 17 134 IPR044808 GO:0003700|GO:0009873
Rops6g01448 139 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Rops6g01448 139 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01448 Rops-Chr6 30215237 30215953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01448 13 135 AP2-EREBP Transcription Factor Family AT3G23230 64.000 6.55e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01448 AP2 3.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01448 - - gmx:100775830 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01448 6 30215237 30215953 Rops6g01448 6 30215237 30215953 ECH