Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01446 ATGGATCTTGTAAGCAGAAGATACTTGATCTATGTGTCTCAACATGGCTCACAAGCTCTTCCTCCAATCTCAAGTCAAGGGAGTTCAATCTTTCATCCTCATCTTCATTCTTCTAGCACCAGTTTTCCCATCATTGCAATTGCTATAATAGGAATAATGGCTACAGCTTTATTGTTGGTGAGCTACTACATCTTTGTGATCAAATGTTGCCTCAATTGGCACCGTATTGATCTTCTAAGACGTTTCTCTCCATCTAGGAGGCGTGAAGATCCATTAGCAATATACTCACCAGGCATAGAACCTCGTGGACTAGATGAGGCAGTGATCCGGTTAATCCCAGTGATTCAATACAAGACAGAAGAAGGGAAAAGAGATTCTGGAGAAAGAAGCTTTTGTGAATGTGCTGTTTGCTTAAATGAGTTTCAACAAGATGAGAAGCTCAGGATTATACCAAATTGCAGCCATGTCTTTCACATTGATTGTATAGATGTTTGGCTTCAGAACAATGCCAATTGTCCACTTTGTAGAACAAGCATTTCCTTGACAAGCAGATACCATATTGATCAGCTTCTCACCCTAAGGCCCTCTTCCCCTCAAGATCAAAACCCACCTAATGAAAACTTCATTGGTGGTGATGAAGATTTTGTTGTGATTGAATTGGGTAATGACCATGATAATAGAGGCCAAAATTTGCAAGGAAGACAAGAAAGAGCCAATGCTTTGGAATTACCAACATGTCCTATTAGTCCTTCACCAAGGAAGATGGAGCATAGAAATGTGGAAAAGAAAACAAGGAAGCTGCATAAGGTGACAAGCATGGGGGACGAGTGTATTGATATTAGAGCCAAAGATGACCAGTTCTCAGTTCAACCCATTAGAAGGTCTTTCTCCATGGACTCATCAGGGGATAGACAGTTCTATTTAGCAGTTCAAGAAGCTCTGAAGCAGCAGAAGAGGCAAGTCAATGAAGTCGGCTCAATTGAAGGCTGCAGTGGTAGTGGTCGAGCCAAGAAATCATTCTTTTCCTTTGGACATGGAAGTAGATCCAGAAGTTCTGTGCAGCCTGTTTATTTGGACCCCTGA 1083 0.4155 MDLVSRRYLIYVSQHGSQALPPISSQGSSIFHPHLHSSSTSFPIIAIAIIGIMATALLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRREDPLAIYSPGIEPRGLDEAVIRLIPVIQYKTEEGKRDSGERSFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTSRYHIDQLLTLRPSSPQDQNPPNENFIGGDEDFVVIELGNDHDNRGQNLQGRQERANALELPTCPISPSPRKMEHRNVEKKTRKLHKVTSMGDECIDIRAKDDQFSVQPIRRSFSMDSSGDRQFYLAVQEALKQQKRQVNEVGSIEGCSGSGRAKKSFFSFGHGSRSRSSVQPVYLDP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01446 360 PANTHER RING-H2 FINGER PROTEIN ATL16 27 356 IPR044600 GO:0016567|GO:0016740
Rops6g01446 360 MobiDBLite consensus disorder prediction 341 360 - -
Rops6g01446 360 SUPERFAMILY RING/U-box 133 182 - -
Rops6g01446 360 CDD RING-H2_EL5-like 133 176 - -
Rops6g01446 360 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Rops6g01446 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 181 IPR013083 -
Rops6g01446 360 SMART ring_2 134 175 IPR001841 -
Rops6g01446 360 FunFam E3 ubiquitin-protein ligase ATL6 96 182 - -
Rops6g01446 360 Pfam Ring finger domain 133 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01446 Rops-Chr6 30203742 30205365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01446 33 360 C3H Transcription Factor Family AT1G04360 54.062 2.00e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01446 - - gmx:100775286 568.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01446 6 30203742 30205365 Rops6g01446 6 30203742 30205365 ECH