Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01432 ATGTTACATGGTCGAAGGTTCACCAATATGACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATGCAGCAGCTCTGGCTAATCCTTGGTGGACCGGTCAAGGGGGGTTATCTGGGGTTGACCCAGGAACCCATTCTTCACCTGGCTTGAGCAAACATCACACAGACCTTGCAATCAACGAAGGTAATAGAGATGAAGATGAACCCAAAGAAGGTGCAGTTGAGGTTGGAACACGCAGACCAAGAGGAAGACCACCTGGATCCAGAAACAAACCAAAACCACCCATCTTTGTAACAAGGGATAGCCCAAATGCTTTAAGGAGCCATGTGATGGAGGTAGCTGGAGGAGCTGATATTGCAGAAAGTGTAGCTCAATTTGCAAGGAAGCGTCAGCGTGGGGTTTGTGTGCTAAGTGGAAGTGGTTCTGTGGCCAACGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTAGTAGCACTTCATGGAAGGTTCGAGATTCTATCCCTAACTGGGGCATTTCTACCAGGACCTTCACCACCAGGGTCCACAGGACTCACTGTGTATCTTGCTGGAGGACAAGGTCAGGTTGTGGGAGGAAGTGTTGTTGGGTCTCTAGTTGCAGCAGGACCTGTTATGGTAATTGCTGCAACTTTTGCTAATGCAACATATGAGAGATTGCCACTTGATGATGATGATGATGAGGGGCCTAGTTCCGCAGTGCAAGGAGGAGGAGCCGGTGGATCGCCACCACCAGGAATTGGAAGCAGTGGGGGTCAGTTGCAGGCTGGGATTCCAGATCCATCATCTTCATCTTTGCCTTTGTATAATTTGCCACCAAATCTGTTGTCCAATGGAGTGCCGGTGGGACATGAAGCTCTTGCTTGGGCTCATGGAAGGCCACCTTACTGA 912 0.4912 MLHGRRFTNMTSSSSSSSSSSSNAAALANPWWTGQGGLSGVDPGTHSSPGLSKHHTDLAINEGNRDEDEPKEGAVEVGTRRPRGRPPGSRNKPKPPIFVTRDSPNALRSHVMEVAGGADIAESVAQFARKRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGAFLPGPSPPGSTGLTVYLAGGQGQVVGGSVVGSLVAAGPVMVIAATFANATYERLPLDDDDDEGPSSAVQGGGAGGSPPPGIGSSGGQLQAGIPDPSSSSLPLYNLPPNLLSNGVPVGHEALAWAHGRPPY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01432 303 Gene3D - 107 234 - -
Rops6g01432 303 MobiDBLite consensus disorder prediction 1 29 - -
Rops6g01432 303 CDD DUF296 108 191 IPR005175 -
Rops6g01432 303 MobiDBLite consensus disorder prediction 58 79 - -
Rops6g01432 303 PIRSF ESCAROLA 38 303 IPR014476 GO:0003680
Rops6g01432 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 108 220 IPR005175 -
Rops6g01432 303 MobiDBLite consensus disorder prediction 227 277 - -
Rops6g01432 303 MobiDBLite consensus disorder prediction 262 277 - -
Rops6g01432 303 ProSiteProfiles PPC domain profile profile. 104 243 IPR005175 -
Rops6g01432 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 57 299 IPR014476 GO:0003680
Rops6g01432 303 FunFam AT-hook motif nuclear-localized protein 107 235 - -
Rops6g01432 303 MobiDBLite consensus disorder prediction 40 54 - -
Rops6g01432 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 104 231 - -
Rops6g01432 303 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01432 Rops-Chr6 30025241 30027165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01432 27 303 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 61.168 6.00e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01432 - - gmx:100798994 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01432 6 30025241 30027165 Rops6g01432 6 30025241 30027165 ECH