Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01431 ATGTTAAAAGCAGTAGCATCTGGGCTGGTGATTACTTCTATCCTCATATGTGTATCTGCAACTGATAATGGATTTCCTAGATGTAACTGCGATGACGAGGCCAGCTTGTGGACTATTGATAGCATTCTGGAGTGTCAGAGAGTTGGAGATTTCTTGATTGCTGTGGCCTACTTCTCCATCCCTATTGAGCTGCTTTATTTCATCAGTTGCTCAAACGTCCCATTCAAATGGGTCCTTGCTGAGTTCATTGCCTTCATTGTACTATGTGGATTGACACATTTGCTCAATGGGTGGACTTATGGCCCTCACACTTTTCAACTTATGGTGGCACTTACTGTCTTCAAAATTCTCACTGCCTTGGTATCTTGTGCCACTGCTATAACTCTCATCACTTTAATTCCTTTACTTCTCAAAGTGAAGGTCAGAGAATTCATGCTAAAGAAAAAGACATGGGATCTTGGAAGGGAGGTTGGTATTATTATGAAACAAAAGGAGGCTGCAATGCATGTTAGAATGCTCACTCAAGAGATTCGCAAGTCACTTGATAGACATACGATTCTGTACACCACTTTGGTGGAGCTGTCTAAAACACTAGGCTTGCAAAATTGTGCTGTGTGGATGCCTAATGTTGATAGGAGAGAGATGAACCTCACTCATGAATTGAATGAGAAGAATTTTAATTTTTCCATACCCATTACTGATCCAGATGTTGTAAGAATTAAGGGAAGTGATGGAGTGAATATACTTAGCTCTGACTCAAAACTTGCTGCTAGTGGAGTTTCTGGTGAGGCAGGACCTGTTGCTGCAATCCGAATGCCAATGCTACGGGTTTGTAATTTCAATGGAGGAACACCTGAGGTAACTCAGGCATGTTATGCAATATTGGTCTTGATTCTTCCTGCTGGAGAGCCTCGATCTTGGAGCAATCAGGAGATGGAGATAATAGAGGTGGTTGCTGATCAGGTCGCGGTGGCACTGTCTCATGCTGCAATTCTTGAAGAGTCCCAACTTATGAGAGAGAAGTTGGCGGAGCAAAATCGAGCTTTGCAACAGGCGAAAAGGAATGCTCTGATGGCAAGCCAGGCAAGAAACTCATTTCAGAAAGTCATGAGTGATGGAATGAGGAGGCCAATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGATGATAATTTAAACAATGAACAGAAACTTATTGTGGATACAATGCTAAGGACCAGCAATGTACTATCAAACTTGATAAATGATGCAATGGACAACACTGCAAGGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGATAAAGGAAGCAGCTTGCCTTGCCAAGTGCATGTGTGTTTATAGGGGCTTTGGTTTTATGGTCGAGGTCGATAAGTCTATACCTGACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAACCTGCTGGATCGCAATCGTGGGGAAGGGATCCTTGTATTTCGGGTTTTTGCAGAAGCTGGAAGTCAGGGAAGGAATGAGAGAGGGTGGGCAAGCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGTTAGGGATCAACAATAGTGATTCTGAAGTTGGGAGCTCAGTTTCGTCAGGAATTGGGGGTAGGAAATATACCAGTGAGGGCGGATTGAGCTTCAGTATTTGCAAGAGGATAGTCCAGCTGATGCAAGGGAACATTTGGTTGGTACCATATAGTCATGGTTTTCCTCAAAGCATGACACTTCTTCTTCGGTTTCAATTACGACCCTCCATTGCCATAGCTATCTCTGAACCTGGAGGATCCTCAGAACGTGTCAATTCCAATTCAATGTTTGGAGGTCTGCAAGTTCTGTTAGTTGACAGTGATGATGTAAATAGAGCAGTGACTCAAAAATTGCTTCGGAAGCTAGGTTGTGTTGTAACTTCTGTTTCATCAGGATTTGAATGCCTTACTGTCATTGGACCTGCTGGATCTTCCATTCAAGTCATCCTTTTGGATCTTAACATGCCTGATTTAGATGGCTTTGAAGTTGCCACAAGGATTCGGAAGTTCAGAAGTGGAAATCGGCCTATGATTGTTGCCTTGACCGCAAGTGCTGAAGATGATTTGTGGGAAAGATGCATGCAAATTGGTGTTAATGGAGTTATCAGAAAACCAGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGGATCCTGATGCAGGGAAATAATGTCCTGTGA 2265 0.4265 MLKAVASGLVITSILICVSATDNGFPRCNCDDEASLWTIDSILECQRVGDFLIAVAYFSIPIELLYFISCSNVPFKWVLAEFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLITLIPLLLKVKVREFMLKKKTWDLGREVGIIMKQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNVDRREMNLTHELNEKNFNFSIPITDPDVVRIKGSDGVNILSSDSKLAASGVSGEAGPVAAIRMPMLRVCNFNGGTPEVTQACYAILVLILPAGEPRSWSNQEMEIIEVVADQVAVALSHAAILEESQLMREKLAEQNRALQQAKRNALMASQARNSFQKVMSDGMRRPMHSILGLLSMIQDDNLNNEQKLIVDTMLRTSNVLSNLINDAMDNTARDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYRGFGFMVEVDKSIPDNVMGDERRVFQVILHMVGNLLDRNRGEGILVFRVFAEAGSQGRNERGWASWRPSSSSGDVNIRFELGINNSDSEVGSSVSSGIGGRKYTSEGGLSFSICKRIVQLMQGNIWLVPYSHGFPQSMTLLLRFQLRPSIAIAISEPGGSSERVNSNSMFGGLQVLLVDSDDVNRAVTQKLLRKLGCVVTSVSSGFECLTVIGPAGSSIQVILLDLNMPDLDGFEVATRIRKFRSGNRPMIVALTASAEDDLWERCMQIGVNGVIRKPVLLQGIASELRRILMQGNNVL* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01431 754 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 347 427 IPR036097 GO:0000155|GO:0007165
Rops6g01431 754 FunFam Ethylene receptor 626 750 - -
Rops6g01431 754 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 417 585 IPR036890 -
Rops6g01431 754 CDD HATPase_ETR2_ERS2-EIN4-like 468 597 - -
Rops6g01431 754 SUPERFAMILY CheY-like 625 747 IPR011006 -
Rops6g01431 754 ProSiteProfiles Response regulatory domain profile. 629 747 IPR001789 GO:0000160
Rops6g01431 754 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 586 IPR003594 -
Rops6g01431 754 PIRSF Ethylen_sen_hybr_HK 1 754 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Rops6g01431 754 ProSiteProfiles Histidine kinase domain profile. 369 580 IPR005467 -
Rops6g01431 754 CDD REC_ETR-like 628 743 - -
Rops6g01431 754 Gene3D - 328 425 - -
Rops6g01431 754 Gene3D - 426 600 IPR036890 -
Rops6g01431 754 Pfam Response regulator receiver domain 630 737 IPR001789 GO:0000160
Rops6g01431 754 Pfam GAF domain 182 326 IPR003018 GO:0005515
Rops6g01431 754 SUPERFAMILY GAF domain-like 185 329 - -
Rops6g01431 754 Gene3D - 161 327 IPR029016 -
Rops6g01431 754 SMART HisKA_10 362 427 IPR003661 GO:0000155|GO:0007165
Rops6g01431 754 Gene3D - 628 752 - -
Rops6g01431 754 Coils Coil 332 362 - -
Rops6g01431 754 SMART REC_2 628 747 IPR001789 GO:0000160
Rops6g01431 754 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 749 - -
Rops6g01431 754 Pfam His Kinase A (phospho-acceptor) domain 363 420 IPR003661 GO:0000155|GO:0007165
Rops6g01431 754 CDD HisKA 360 420 IPR003661 GO:0000155|GO:0007165
Rops6g01431 754 SMART gaf_1 182 336 IPR003018 GO:0005515
Rops6g01431 754 FunFam Ethylene receptor 4 329 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01431 Rops-Chr6 29995288 29999744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01431 22 747 Miscellaneous Gene Families AT3G04580 57.604 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops6g01431 GAF 3.6e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01431 K14509 - gmx:100787425 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01431 6 29995288 29999744 Rops6g01431 6 29995288 29999744 ECH
Rops8g04170 8 84007601 84012160 Rops6g01431 6 29995288 29999744 ECH