Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01426 ATGGATTCGGATCAGGGTAAGCTTTTCATTGGAGGCATTTCATGGGACACCACCGAGGATAAGCTGAAGGAGCACTTCAGCAACTACGGTGATGTGTTGAGTACCTCAGTGATGCGAGAGAAAAACACTGGAAAGCCGAGAGGCTTTGGGTTTGTTGTGTTTGCAGATCCTTCAATCCTAGATAGGGTTCTGGAGGACAAGCATGTCATTGATGGAAGAACGGTTGATGCCAAGAGGGCGTTCTCAAGAGAGGATCAACCAATTTCTGTCACTTCCAGAGCTGGAAATCCCAATTCTGGCATGAATTCTGGAAATGGTGGAAATATCAGGACCAAAAAGATATTTGTTGGAGGGTTGCCTCCCACTCTGTCTGAAGAAAAATTTCGTCAGTACTTTGAGTCTTATGGACATGTAACTGATGTAGTAGTCATGTTTGACCAGAATACTGGACGACCACGAGGATTTGGGTTTATTTCATTTGACACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCCAATCCTGGTGCAAGTGGCCGCATGATGGGTGGTTCTGGAGGTGGTGGTGCTGGAATTGGTGGGTATCAAGGGTATGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTATGGATTCTAGCAGGTATATGCAGCCTCAGAGTGCTGCAGGTGGGTTCCCGCCTTATGGTTCTTCTGCCTATAGTGCCGCTGGATATGGGTATGGTTCGGCTAATAATGGCATCAGTTATGGTGCATATGGAAGTTATGGTGGTGCCACTGCTGGGTATGGTGGACCTGCTGCTGCAACTTATGGGAATCCAAATGTCCCTAATGCCGCTTATGCTGGTGGTCCACCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGTTATGGGTCTATGGGTTATGGGAATGCTGCTCCTTGGGGTGCTCCCAGTGGTGGTGCTGGATCTGGTGGCAGCGGCGGCCCTGGTTCAGCAACTGCTGGTCAATCCCCTAGTGGAGCTACTGGATATGGGAATCAAGGTTATGGATATGGTGGGTATGGTGGATATGGTGGAACTGATAGCTCTTATGGGAATCCAGGTGTATATGGTGCTGTTGGAGGGCGCACTGGGAATGCTCCAAATAGTAATGCTAGTGGTCCTGGTGGGAGTGAACTACAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGTGGCTATGGGGATGCAAATGGAAATTCTGGTTATGGAAATGCAGCTTGGAGATCTGAACAAGCTCAAGCGCCTGGAAATTATGGAACTCCTCAGGGAAATGGTCCCCATGGTGGGCAAGTTGGTTACGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1443 0.4927 MDSDQGKLFIGGISWDTTEDKLKEHFSNYGDVLSTSVMREKNTGKPRGFGFVVFADPSILDRVLEDKHVIDGRTVDAKRAFSREDQPISVTSRAGNPNSGMNSGNGGNIRTKKIFVGGLPPTLSEEKFRQYFESYGHVTDVVVMFDQNTGRPRGFGFISFDTEEAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGSGGGGAGIGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSSAYSAAGYGYGSANNGISYGAYGSYGGATAGYGGPAAATYGNPNVPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNAAPWGAPSGGAGSGGSGGPGSATAGQSPSGATGYGNQGYGYGGYGGYGGTDSSYGNPGVYGAVGGRTGNAPNSNASGPGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQAQAPGNYGTPQGNGPHGGQVGYGGGYGGAQSRQAQQQ* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01426 480 CDD RRM2_Hrp1p 113 190 - -
Rops6g01426 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Rops6g01426 480 MobiDBLite consensus disorder prediction 398 480 - -
Rops6g01426 480 MobiDBLite consensus disorder prediction 337 357 - -
Rops6g01426 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Rops6g01426 480 SMART rrm1_1 113 185 IPR000504 GO:0003723
Rops6g01426 480 MobiDBLite consensus disorder prediction 86 107 - -
Rops6g01426 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Rops6g01426 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Rops6g01426 480 Gene3D - 107 231 IPR012677 -
Rops6g01426 480 Gene3D - 4 87 IPR012677 -
Rops6g01426 480 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Rops6g01426 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Rops6g01426 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 480 - -
Rops6g01426 480 MobiDBLite consensus disorder prediction 398 456 - -
Rops6g01426 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Rops6g01426 480 FunFam heterogeneous nuclear ribonucleoprotein 1 107 230 - -
Rops6g01426 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Rops6g01426 480 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01426 Rops-Chr6 29875528 29879479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01426 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.500 1.65e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01426 K14411 - gmx:100811267 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01426 6 29875528 29879479 Rops6g01426 6 29875528 29879479 ECH