Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01422 ATGTTTCTACTCACCACCAACAGAGGGTGCCTTGATTGCCTCGTTTCCTTGTACAAGGGGTACACCATGTTGCAGGATGTTTATGATCAGCCAGTGCAACCAAAGGTGGAGCAACAGCATCAGGAGCAGGAGCAGCTGCCACCTCCCATTGATGAAATTTCAAGCCCTCTTAGTGCTCGAATTTTCGAACTTTGTAACCCTGAATTGTTCCCAGAGGCTTTGCAGAATTCTGAGGTTACTTCCAGCTCAAATTGTTGCTATGAAGAGAACTCCTCATATAATACATCTTTAGCTTTAGATGTAGAAACTAAGTTCAATAGCAATAGCAACACAGTCACCACTCCAACTAGCACAACCAATAACAACACAACCAACAGCAGTAATCTGTCTATTATCTTTGACTCCCAAGAAGATATTGACAATGACATCTCTGCCTCCATAGACTTCTCACTATCTCCATCTTTCAATGTCCCCTCATTTCTCCCAGTCACATCCCAGCAAGAACAGTTTGATTTCTCTTCTTTGCAGCCTCAGGTCCAACTAGCAGCATGTTCAGTTGTGGAGGGCTTCTCTCAGTATCCCACCGACCCTGTTGCACCTCTTATGGGAGCTCCATTGCCACCTGTTTTTGAAGAGGATTGCATATCTTCTGTCCCTTCTTATGCACCTCTGAACCCTTCATCTCCTTCTTGCACTTATCTCAGTCCTGGCTTGCCACCATACATGCCTCCTGGGCCCCTTAGTACTGCCTTATCAACTGACAGTTCTGGATTATATGGTGGGAACATTCTTCTTGGTTCTGAACTTCAGACCCAAGATTTGGAATACCAGGGAGAAAATGGTAGAATATATTGTACAGATTCCATTCAAAGGGTGTTTAACCCTCCAGACCTTCAGGCACTTAGTACTGAGAGTCAGCAACTAGTAGCTGGAGCTGGGACTTCTGCCACTCTGACACCAGAAATTTCAAACTTGGAGGACTCCTCCTTCAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAAAAGATTCATAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAAATTAAGTATGCCTGTCGCAAAACTCTGGCAGATAGCAGACCTCGGGTTAGAGGAAGGTTTGCAAAGAATGATGACTTTGGAGATACTCATAGAACTGCTAGTAGTAACCATGAAGAAGAAGATGATGAAGTAGTTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATCTTTGCTCATATCAGTGGAGTGAACTCCTTCAAATGCAACTATTCCATCCAGTCCTGGATTTGA 1314 0.433 MFLLTTNRGCLDCLVSLYKGYTMLQDVYDQPVQPKVEQQHQEQEQLPPPIDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYNTSLALDVETKFNSNSNTVTTPTSTTNNNTTNSSNLSIIFDSQEDIDNDISASIDFSLSPSFNVPSFLPVTSQQEQFDFSSLQPQVQLAACSVVEGFSQYPTDPVAPLMGAPLPPVFEEDCISSVPSYAPLNPSSPSCTYLSPGLPPYMPPGPLSTALSTDSSGLYGGNILLGSELQTQDLEYQGENGRIYCTDSIQRVFNPPDLQALSTESQQLVAGAGTSATLTPEISNLEDSSFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDTHRTASSNHEEEDDEVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01422 437 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 130 398 IPR045281 GO:0009909
Rops6g01422 437 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515
Rops6g01422 437 MobiDBLite consensus disorder prediction 379 403 - -
Rops6g01422 437 MobiDBLite consensus disorder prediction 379 400 - -
Rops6g01422 437 Pfam CCT motif 340 382 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01422 Rops-Chr6 29823817 29827955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01422 340 398 C2C2-CO-like Transcription Factor Family AT5G57660 46.875 2.13e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops6g01422 CCT 5.9e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01422 - - aprc:113871720 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01422 6 29823817 29827955 Rops6g01422 6 29823817 29827955 ECH