Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01412 ATGGGATGGGGTGTAATGGAAGAGGATGGATGGAGGAAGGGACCTTGGACTGCTGAGGAGGACAGATTACTCATTGAGTATGTCAAGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTGCAGGACTGAAAAGAAATGGAAAGAGCTGCAGATTGAGATGGGTGAATTACCTGAGACCAGACCTGAAGAAGGGTCAGATAACTCCACAAGAAGAAAGCATAATTCAGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAACTTGCCAGGCAGAACTGACAATGAGATAAAGAATTATTGGAGGACCCATTTCAAGAAAAAGGCCAAAAACCCCTCTGATGCTGCTGAAAAGGCTAAAAATCGTCCCTTCAGGAGGCAGCAATTTCGACAGCAACAACAGCAGTTGAAGCAGCAGCAGCAGCAGACTCAGCAACAACAACTGCAATTCAACTTGGACATGAAAGGGATCATAAACTTGCTTGAGGAAAATGACTATAGAGTGCCTTCTATATCTCAAGAGACACAAGAAATGGCCAGCATGTATCCAAACACACAAGAACAGCAAGGCTACTTCTACTCTATGCTCAATGGCAATGTCTCTGCACCAGAATCCTCAAATGAAGAAATTTTGTGGGATGGACTGTGGAACTTGGATGATGTTCTTTGCGATTCAATGCAGCTAGTGCTACAAGCAAAGCCATTCTGCACAATTTAA 735 0.4463 MGWGVMEEDGWRKGPWTAEEDRLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKKGQITPQEESIIQELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKNPSDAAEKAKNRPFRRQQFRQQQQQLKQQQQQTQQQQLQFNLDMKGIINLLEENDYRVPSISQETQEMASMYPNTQEQQGYFYSMLNGNVSAPESSNEEILWDGLWNLDDVLCDSMQLVLQAKPFCTI* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01412 244 CDD SANT 70 111 IPR001005 -
Rops6g01412 244 Gene3D - 70 114 - -
Rops6g01412 244 MobiDBLite consensus disorder prediction 112 130 - -
Rops6g01412 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Rops6g01412 244 CDD SANT 15 60 IPR001005 -
Rops6g01412 244 Gene3D - 13 65 - -
Rops6g01412 244 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Rops6g01412 244 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops6g01412 244 Coils Coil 132 155 - -
Rops6g01412 244 SMART sant 65 113 IPR001005 -
Rops6g01412 244 SMART sant 12 62 IPR001005 -
Rops6g01412 244 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops6g01412 244 FunFam Myb transcription factor 13 65 - -
Rops6g01412 244 MobiDBLite consensus disorder prediction 132 148 - -
Rops6g01412 244 FunFam MYB-related transcription factor 69 115 - -
Rops6g01412 244 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops6g01412 244 MobiDBLite consensus disorder prediction 112 148 - -
Rops6g01412 244 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Rops6g01412 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Rops6g01412 244 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 7 223 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01412 Rops-Chr6 29716251 29717389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01412 8 225 MYB Transcription Factor Family AT3G24310 60.084 8.21e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g01412 Myb_DNA-binding 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01412 K09422 - gmx:100782089 385.571