Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01408 ATGGAGCAGGAAGAGCACGAGGTGTACGGTGCAGACATTCCCGATGAAGAGGTTGAGATGGACGCAGACGCTGAACAACAAGAAGAAGAAGAACTCGCCCCAAATCACCCAACCAAGGACTTGGAGGACATGAAGAAGAGGTTGAAGGAGATCGAGGAAGAAGCTGGTGCCCTTCGCGAAATGCAAGCCAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGATTCGTCTGGTTCTTCTGCAACTCAAGCTGAAAAGGAAGAAGTGGATGCTCGGTCAATCTATGTTGGTAATGTTGACTACGCATGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCTTGTGGAACTGTGAACAGAGTAACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAGTTTGTTGAGATTGATGCTGTTCAGAATGCTCTGCTGTTAAATGAATCAGAATTGCATGGCCGACAACTGAAGGTGTCTGCCAAGCGCACAAATGTTCCTGGAATGAAACAGTATTTTGGAAGAAGACCTTCGGGTTTCCGATCTAGGAGGCCTTTCATGCCTTCTCCATTCTATCCACCATATGGTTATGGAAGGTTTCCAAGGTATAGAAGACCAACGCGATACAGACCCTATTAG 648 0.4552 MEQEEHEVYGADIPDEEVEMDADAEQQEEEELAPNHPTKDLEDMKKRLKEIEEEAGALREMQAKVEKEMGAVQDSSGSSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYFGRRPSGFRSRRPFMPSPFYPPYGYGRFPRYRRPTRYRPY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01408 215 SMART rrm1_1 92 163 IPR000504 GO:0003723
Rops6g01408 215 CDD RRM_II_PABPs 92 163 - -
Rops6g01408 215 FunFam Polyadenylate-binding protein 1 85 171 - -
Rops6g01408 215 MobiDBLite consensus disorder prediction 67 87 - -
Rops6g01408 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 18 203 - -
Rops6g01408 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 167 IPR000504 GO:0003723
Rops6g01408 215 Gene3D - 11 173 IPR012677 -
Rops6g01408 215 Coils Coil 41 68 - -
Rops6g01408 215 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g01408 215 MobiDBLite consensus disorder prediction 1 41 - -
Rops6g01408 215 SUPERFAMILY RNA-binding domain, RBD 82 191 IPR035979 GO:0003676
Rops6g01408 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01408 Rops-Chr6 29679139 29683485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01408 92 163 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 4.79e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01408 K14396 - gmx:100527139 302.753