Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01393 ATGGCGGATGCACCGGCGAGCCCAGCGGGTGGGAGTCACGAGAGTGGTGGCGATCAGAGCCCGCGTGGTTCTTCATCTGGTGCGAGGGAACAGGACCGTTACCTTCCCATTGCGAACATTAGCCGGATCATGAAGAAGGCTTTGCCGGCGAATGGGAAGATTGCAAAGGATGCCAAGGATACCATGCAGGAATGTGTTTCTGAATTCATCAGCTTTATTACCAGCGAGGCAAGTGAGAAATGCCAGAAAGAGAAGAGAAAGACCATTAATGGAGACGATTTGTTATGGGCGATGGCCACTTTAGGATTTGAAGACTACATAGAGCCACTTAAAGTGTATCTAGGAAGGTACAGAGAGTTGGAGGGTGACAGTAAAGGATCTGCTAGAGGTGGTGATGGATCTGGTAGACGAGATCAAGTTGGCCTTACAGGTCAAAATGCTCAGCTTGTTCATCAGGGTTCAATGAACTATATTAGTTCACAGGTGCAGCCACAGCATCTGGTTATGCCTCCGATGCAAAGCCATGAATAG 531 0.4896 MADAPASPAGGSHESGGDQSPRGSSSGAREQDRYLPIANISRIMKKALPANGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLGRYRELEGDSKGSARGGDGSGRRDQVGLTGQNAQLVHQGSMNYISSQVQPQHLVMPPMQSHE* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01393 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 18 148 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops6g01393 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Rops6g01393 176 SUPERFAMILY Histone-fold 31 146 IPR009072 GO:0046982
Rops6g01393 176 MobiDBLite consensus disorder prediction 13 27 - -
Rops6g01393 176 MobiDBLite consensus disorder prediction 1 32 - -
Rops6g01393 176 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Rops6g01393 176 Gene3D Histone, subunit A 21 158 IPR009072 GO:0046982
Rops6g01393 176 FunFam Nuclear transcription factor Y subunit B-3 23 147 - -
Rops6g01393 176 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Rops6g01393 176 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Rops6g01393 176 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01393 Rops-Chr6 29566531 29572315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01393 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 72.254 2.55e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops6g01393 CBFD_NFYB_HMF 1.1e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01393 K08065 - gmx:100779577 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01393 6 29566531 29572315 Rops6g01393 6 29566531 29572315 ECH