Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01379 ATGGACCACAGACTAAGACAACCCCTAATTGAAGTTCCTTCTAGTGGCAACAAATTGAACGTGAGGCAGATTCAGAAAGAGAAGGTAGTGTTGGTGATGGGAGCCACAGGGACAGGAAAGTCAAGGCTCTCCATTGACTTAGCCACTTGTTTCCCATCAGAAATCATCAATTCTGACAAAATTCAAATCTACGAAGGCCTTGACATTGTCACTAACAAAATCTCCAAGGAAGAACAACGTGGGGTGCCACATCACTTACTAGGAACACAAAATTCCAACACACAGTTCACATCCAATGATTTCCGTGACATGTCATTTGCAGCCATTGATTCAATCACAAGCCGTGAACAGCTTCCCATCATCGTTGGAGGCTCAAATTCCTACCTTGAAGCCTTAGTAGATGATGATGACTTCAAGTTTCGATCAAGGGATTATTCAAAAGGGATTAGAAAAGCCATTGGAATACCAGAATTTGATCAATATTTTAGAAGGGAAGCTTTTGTGGATGAAGAAACTAGAAATATGTTACTTGAACAAGCAATTAGTGAAATGAAGTTGAATACTATCGAGCTAGCTAGGAAACAGTTGGGGAAGATTCAAAGGCTACGGAACGTTAAGAGATGGGAGATTCATCACTTAGATGCTACACCTGTGTTCCAAAAGCGTGGCAGAGAAGCAGATGAAGCATGGAAGAAGCTGGTTGCAGAGCCAAGTGCTATGATTGTTGCTCATTTTCTCTATAACTCAAACACTGCTAATGTTGTTTCTGGTCTCAGAGTACCAGCTTCCAAGAGTGTTATGGCTGCAGCAACATGAAAGGAGGCAATCGAACTAAAATTTCACACACACATTGGCTATCCATTTCCCTTGCCCACCGGCAACAGTTATCTTCTTGAGGGTTGTGGCGGTGACTATGCCGGTGTCTATGGTGGCTATGTCTATGGTGACTCCTATGTTCCTGATCTGGGAATGAAGGAGAAGGTGATGAGAAACTATTCTAAATGGTGGTTCGAACCACCAACTTTATTCCTGAACAATGTTTTGAACAACTCATCTCAATGCTGA 1065 0.4225 MDHRLRQPLIEVPSSGNKLNVRQIQKEKVVLVMGATGTGKSRLSIDLATCFPSEIINSDKIQIYEGLDIVTNKISKEEQRGVPHHLLGTQNSNTQFTSNDFRDMSFAAIDSITSREQLPIIVGGSNSYLEALVDDDDFKFRSRDYSKGIRKAIGIPEFDQYFRREAFVDEETRNMLLEQAISEMKLNTIELARKQLGKIQRLRNVKRWEIHHLDATPVFQKRGREADEAWKKLVAEPSAMIVAHFLYNSNTANVVSGLRVPASKSVMAAAT*KEAIELKFHTHIGYPFPLPTGNSYLLEGCGGDYAGVYGGYVYGDSYVPDLGMKEKVMRNYSKWWFEPPTLFLNNVLNNSSQC* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01379 353 Gene3D - 211 246 IPR027417 -
Rops6g01379 353 Gene3D - 26 136 IPR027417 -
Rops6g01379 353 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 136 IPR027417 -
Rops6g01379 353 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 143 210 - -
Rops6g01379 353 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 140 245 IPR039657 -
Rops6g01379 353 Pfam IPP transferase 62 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01379 Rops-Chr6 29371836 29382803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01379 144 246 C2H2 Transcription Factor Family AT2G27760 29.231 3.02e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01379 K10760 - gmx:100803964 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01379 6 29371836 29382803 Rops6g01379 6 29371836 29382803 ECH