Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01378 ATGAAGCTAGTGTCTTGTGACACTGGAGGAACCAGCAATGATGTCACTACTTATTCAGCTGAGGAACATATAATTCCAAACCCAAAATTTGTCATCGCAGCATCTGAAAGGAATAAGAGCCAGTGGAGTTGCCTCCCAAAACCATCTCACAATTATGTTAAATATCTTTCAGAATCCTCAACTTGTCTCCCAACTACTGCAGATGAATATATGATTGGGAGCAATTATCTACCTGTTGGCAGCATCAATGATGGTAATGGGGTTAATGGAACAGACAGAAACTTCTTTTACAATGATCCAGGAAAAGATTTTGGCTTTAAACCTATTGAATCTTCAAGTAGTGACTTTGACATTGGGAAGTGGATGGGGTTTTGGAGACCTGATGAAGGAAAGGAAGCAACTAAAGTTGAAACTGAAAGTAGTCAAAATCTTGTTTATGCTGAGAGTCATGCTGCATGGACAGTGGATTCAGTTGGAGATAAGCACAATGCTTCACGACTTGATCCAATGGTGATGGTTGGTGCTCCTTCTTTCCTTCCCAAACCAGGAAGCAGCTCCTCAAAACAGAAAGCACGTGTCACTGACCGTCAACGCAGGCAACGTATTGCTGATAACCTCAAAGCCTTACATGAACTGCTTCCAAATCCAGAGGAGGGTAGTCAAGCGTACATACTGGACGATATCATTGACTATGTCAAATATTTGCAGCTTCAAATAAAGGAACTAAGTGGAAGTAGATTGCAAGCTGACTCAAATGCTATACCACTCGTTTTCCATGAGGGTTATGGCCATTATATCAACCAACAGATGCTCAGTGAACCCCTTGAAGAGATAATGGGGAAACTACTTGAAGAACATTCAGCAGCTGCTAGTCAGCTACTTGAAAGTAAGGGTCTTTTCCTGCTTCCTATGGCTTTGGTTGATGACTTGAGCCAAGCTATGCAAATGTTTGGAGGGAGTGCACTTGTCTGA 972 0.4198 MKLVSCDTGGTSNDVTTYSAEEHIIPNPKFVIAASERNKSQWSCLPKPSHNYVKYLSESSTCLPTTADEYMIGSNYLPVGSINDGNGVNGTDRNFFYNDPGKDFGFKPIESSSSDFDIGKWMGFWRPDEGKEATKVETESSQNLVYAESHAAWTVDSVGDKHNASRLDPMVMVGAPSFLPKPGSSSSKQKARVTDRQRRQRIADNLKALHELLPNPEEGSQAYILDDIIDYVKYLQLQIKELSGSRLQADSNAIPLVFHEGYGHYINQQMLSEPLEEIMGKLLEEHSAAASQLLESKGLFLLPMALVDDLSQAMQMFGGSALV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01378 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Rops6g01378 323 MobiDBLite consensus disorder prediction 178 198 - -
Rops6g01378 323 SMART finulus 192 241 IPR011598 GO:0046983
Rops6g01378 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 248 IPR036638 GO:0046983
Rops6g01378 323 Gene3D - 184 254 IPR036638 GO:0046983
Rops6g01378 323 Pfam Helix-loop-helix DNA-binding domain 188 236 IPR011598 GO:0046983
Rops6g01378 323 CDD bHLH_AtbHLH_like 194 243 IPR045239 -
Rops6g01378 323 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 111 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01378 Rops-Chr6 29356537 29358506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01378 193 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 41.463 2.94e-22 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01378 HLH 6.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01378 - - cam:101507064 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01378 6 29356537 29358506 Rops6g01378 6 29356537 29358506 ECH