Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01365 ATGGCTGCGCCACTAGGTAACAAACTTCAAAGCATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGCCCACAACAAGTGATTCTGGTTTGGCGTGATGGCTACTACAATGGGGCAATTAAGACTAGGAAGACAGTGCAACCAATGGAGGTTAGTGCTGAGGAGGCTTCTCTTCAAAGAAGCCAGCAACTGAGAGAACTCTATGAATCATTGTCTGCCGGAGAAACAAACCCACCAACTCGCCGGCCTTGTGCCGCCTTGTCGCCGGAGGACTTAACAGAATCTGAATGGTTCTATTTGATGTGTGTCTCATTCTCTTTCCCTCCTGGTGTAGGGTTGCCGGGAAAGGCATATGCCAGGAGGCAGCACGTATGGCTCACTGGTGCAAACGAGGTGGACAGCAAAACATTTTCAAGAGCTATTCTAGCCAAGAGTGCTCGTATACAGACCGTGGTGTGCATTCCTGTATTAGACGGCGTCGTTGAGTTGGGCATGACAGATAAGGTCCAAGAAGACCTCAATTTCATCCAACACGTGAAAAGCTTCTTCATAGACCACCACCCTCTACCGCCGAAGCCAGCACTCTCGGAGCACTCAACCTCCAACCCAACCTCCTCCACCGACCACATCCCCATCGTGATGTACACCGTGGCAGACCCACCGGCCACCAATCCCAACCAAGACGACATGGATGAATACGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGATGATGACGAAGACGACGAAGCCCAATCTGGCTCAGAAGACGAAGAAACCGGAGCCCGTAACGCCCGCCAGACATCCACACTGGACGTGGTGGCTGCGGCGGAGCCAAGCGAGCTGATGCAGATGGAGATTGCCGATGAAATCCGGGTCGGGTCACCCAATGACGGGTCGAATAACTTGGACTCGGACTTCCATATGCTAGCGGTGAGTCAGCAGGGGAACCCGTCGGGGCAAGCTGAGTCGAATCGGAGGTGGGGCCCGATTCAAGACCCGTTGGGTTCGTTGCAAGTTCAACTGCCGGCTTCAGTACTTCATCCATTGGAAGATTTGACACAAGAAGACACTCACTATTCTCAAACAGTATCCAACATCCTCCAAAACCAGTCCACCCGGTGGAACGAGTCACCCTCCATTGACTACATCACTTACTCCACCCAAACAGCTTTCGCCAAGTGGAACAACCTCACCAACCACCACCTCCACGCCGCGGCGGTGGACGGCACCGCCCAGTGGCTCCTCAAGTACATTCTCTTCACCGTCCCATACCTTCACACCAAGAACCACGACGAAAGTTCTCCCCAAACCCGAGACGCCGCCGCCGCACGGTTACGCGGCAAGGGAACACCACAAGACGAGCTTAGCGCCAACCACGTTCTGGCTGAGCGCCGCCGCCGCGAGAAGCTCAACGAGAGGTTCATCATTCTAAGGTCACTCGTGCCGTTTGTTACCAAAATGGACAAGGCTTCAATATTAGGAGATACCATAGAATACGTAAAACAGCTTCGTAGGAAGATTCAGGACCTTGAGACACGTAACCGTCAAATGGAGACGGAACAACGTTCCAGAGTAGCGGAGTTACAGCTTCAGAGGACAAGTAGCAGCTCCACCAAGGAACAACAAAGAAGTGGGGTCACTTTCATGGTGGGGCCCGATAAGAAGAAGGTGAGGATCGTTGAGGCTGAAGCTGAGGTCTCCACGTCGGTTCAAGTTTCGATCATAGAGTGTGATGCGCTTTTGGAGTTGGAGTGTCCCCATAGAGAAGGGTTGTTGCTTGATGTGATGCTAATGTTGAGGGAGTTGAGAATAGAGGTGATTGGGGTGCAGTCTTCGCTTAACAATGGGGTGTTTGTAGCGGAGTTGAGGGCAAAGGTGAAGGAAAATGCAAATGGGAAGAAGGTTAGCATTGTGGAAGTTAAAAGGGCACTTAATCAAATCATACCCCACAGTACTCTCTAG 1992 0.5196 MAAPLGNKLQSMLQAAVQSVQWTYSLFWQLCPQQVILVWRDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCAALSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSARIQTVVCIPVLDGVVELGMTDKVQEDLNFIQHVKSFFIDHHPLPPKPALSEHSTSNPTSSTDHIPIVMYTVADPPATNPNQDDMDEYEEEEEEEEEEEDDDEDDEAQSGSEDEETGARNARQTSTLDVVAAAEPSELMQMEIADEIRVGSPNDGSNNLDSDFHMLAVSQQGNPSGQAESNRRWGPIQDPLGSLQVQLPASVLHPLEDLTQEDTHYSQTVSNILQNQSTRWNESPSIDYITYSTQTAFAKWNNLTNHHLHAAAVDGTAQWLLKYILFTVPYLHTKNHDESSPQTRDAAAARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLETRNRQMETEQRSRVAELQLQRTSSSSTKEQQRSGVTFMVGPDKKKVRIVEAEAEVSTSVQVSIIECDALLELECPHREGLLLDVMLMLRELRIEVIGVQSSLNNGVFVAELRAKVKENANGKKVSIVEVKRALNQIIPHSTL* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01365 663 MobiDBLite consensus disorder prediction 439 470 - -
Rops6g01365 663 Gene3D - 465 538 IPR036638 GO:0046983
Rops6g01365 663 PANTHER TRANSCRIPTION FACTOR TT8 7 660 - -
Rops6g01365 663 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 191 IPR025610 -
Rops6g01365 663 Coils Coil 234 261 - -
Rops6g01365 663 MobiDBLite consensus disorder prediction 236 264 - -
Rops6g01365 663 MobiDBLite consensus disorder prediction 524 554 - -
Rops6g01365 663 MobiDBLite consensus disorder prediction 225 281 - -
Rops6g01365 663 Pfam Helix-loop-helix DNA-binding domain 467 514 IPR011598 GO:0046983
Rops6g01365 663 MobiDBLite consensus disorder prediction 533 554 - -
Rops6g01365 663 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983
Rops6g01365 663 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 533 IPR036638 GO:0046983
Rops6g01365 663 Coils Coil 503 530 - -
Rops6g01365 663 SMART finulus 470 519 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01365 Rops-Chr6 29159058 29167140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01365 301 662 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 36.986 1.34e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01365 bHLH-MYC_N 1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01365 - - gmx:100807157 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03493 8 74370206 74375061 Rops6g01365 6 29159058 29167140 PCT