Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01351 ATGGGAGTGTGGGGATATGTCAAGGAGCTCGAATTGGTGGTCAATTTTGATGTTCCAAACCACTACGAAGATTATGTATATCGTGTTGGGCGCACTGGCAGATATGGCCGAAAGGGTTGCGCCATTACATTTATTTCTGAGGAAGATTCAAGATATGCACCAGATCTGGTAAAAGCCTTGGAGTCTGAGCAGATTGTTCCCAATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTAGAGCAAGTCCATGGTACTGGTTATGGAGGCAGTGGCTTTAAATTTAACGAAGAGGAAGATGAGGTGAAGAGAGCATCGAAGAAAGCACAAGCCAAAGAATATGGGTTCGATGAAGACAACCCAGACATAGCCATCGTTAGCAGCAGCCACGACATGTCCATAGCAGAGAAGGGCACTTTTAACGGGACAGAGAAAAAGGCCGCGGGTAGCGTGAGGCGATGCAAAGGACATAAACTCAATGATTTTTCTCAAAATAAGAATGAGTAA 522 0.4444 MGVWGYVKELELVVNFDVPNHYEDYVYRVGRTGRYGRKGCAITFISEEDSRYAPDLVKALESEQIVPNDLKALADSFMAKVNQGLEQVHGTGYGGSGFKFNEEEDEVKRASKKAQAKEYGFDEDNPDIAIVSSSHDMSIAEKGTFNGTEKKAAGSVRRCKGHKLNDFSQNKNE* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01351 173 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 78 IPR001650 -
Rops6g01351 173 Gene3D - 6 142 IPR027417 -
Rops6g01351 173 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 117 - -
Rops6g01351 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 61 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01351 Rops-Chr6 28972004 28978394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01351 7 56 Eukaryotic Initiation Factors Gene Family AT1G72730 50.000 9.67e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01351 K12811 - ini:109181869 218.009