Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01345 ATGAGGGAGGGGTTGAGATCTCGGACTCGGTTGGGGAAGATTTCTGGTAACGGAGGAGTTGTTCAGAAGGAAAAGGTTGATGTGAAGAATGAGGCTTTTGATTTGGGTGGCAAGGGTTTAGGGGATACCGACTTAACAATTGAGAAGAAGGAAGGAGTTAAACATGCAGTGAAAGAAGAATGTGACTTGGATTTGGAGGTGAGTACCAGTGGAAATGTTGACTTAGTTGAGAATGAGAATAAGAATGATAAGAGTTGTTTTAGAGAGGGGGGTAGCATTGTAGAAGCTGAAGTTGATAGGAAGGCCAATGAAGTGTTGATTGGGGGTCGAGTGTTGCGCTCGAGGTTGAAGAGGGGAGATGATAAAATATCTTCTAATGGAGGGAATGATGGTGTCGTTTCTGGGAATAATAGAGGACATGGTGGGTTTGAGAGGATAAAAGTTAAGAAGGAATGTGTAGAAGCTGATGAATTTTTAACTGACAGCAATGAGAATGAAAGGGTTACGGCGAAAAAGGAAGGGAGTGACAAGATGAATTTGAAACGGAAGCGAGGGAGACCTCCCAAAATAGCGTTGGAAGAGGAAGACCAGTTAGTTGATCAGTCACCACGTAAGCGTGGAAGACCCCCCAAGGATGGCAGACAAAGCCATATCCGGACAGTGGTGCGTAAAGGAAAGGCAGGCCTCAAGAAAGGTAAAGAAGGTTTAACTATGAAAGATAGTCCAAATGTGAATGTAACGTGTTCGAGGAGATCTTCTAGTAGAGAGTTAAAAAAGAAGGGATTTTCTCCTGTCAATAAGAATAAATTTGGAAAGGTTTCGAAAACTGAGATCAATGAGGTGGCCGCACCATCGAAATCAAATGCTGTGAATGCACTTGTTGCGGAGAAAAGTGGAAAGAGTAAAGTAAAGCAGTTAGTGAGGGATCAAATAATGGAACGGCTCTCAGCTGCAGGCTGGACAGTCGACTATAGACCCAGGAATGGCAGAGTATATAATGATGCGGTGTATGTTAGTCTGGATGGAAAGACACATTGGTCAATCACCTTGGCCTACAATAGGCTTAAAATGCATTATGAAGCTGGTGATGGTGAAGGTAAGGTGTACAGGCCAGGTTTCGAATTTACACCGATACCACCAGAGGATTTCAAAATACTAACTAAAGTAATGAACAAGAAAAGAAAAAGTAAAGATAAATTGGCGCCATTCGGGGGGAAGGGTGGAAAGACAGTTGATGGAGTCAATAGAAAAGGGAAAGAGAAACAGAGTTCCGGTGCAGGCATGGGTAAGTCAGTGAAGGGGAAAATGAAAAGGAAACGGTCACATCTCAGGGAGGACGACACAAATGTTACATCACTTGAAAGGATGCTAGTGGTCAGGGATCATAAGCGACACAAAACACAAAACAAGAAGCGATGTGCTCCATTGGTTCGCAATACTGAGGGAAATAAAGATTCAGAAATTGATGGATATGTGCTATACAGTGGAAAACGAACTATGCTTGCCTGGATGATTGATTTGGGCGCAATCCTCCAAAATGGGAAGGTTCATTATATGCAAAACAGATCAAAATCTGCATTACTGGATGGTAAGATCACAGGAGATGGCATTCATTGTGGCTGCTGTAATGAAATCATTACAATTTCAGACTTTGGTGCTCATGCAGGAAGCAAACACTCTGATCCTCTTAAAAATATATATTCAGAGGAAGGAACTTCTCTCTTACAATGCCTGCTAGATTCATGGAATAAACAAGATGAATCTGAACGTAAAGGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGCGCTATCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCGACATTCCATCAAAGCTGCTTGGATGTAGAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGTTTGGTTGGTGGAAGTTCAAACCAAAGGGCTGTCCATGATACGTTACTCACTTGCCATTTATGTGATGAAAAATATCACACATCCTGTATTGAGGCAAATGTTGCCAAGACTGATGATTCTAGGGATGCCTTCTTTTGTGGAGACAGATGTGAAGAGTTATCTAAGAGACTTGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTTGACTTTTATTCGGCGGTCGGATGTTGGCTTTGATGCTTCTCAGATAAAACCGCAGATTATTGAATGTAATTCCAAGCTGGCTGTTGCATTGTCGATAATGGATGAGTGTTTCCTGCCATATATCGATAATAGAAGCGGGATTAATCTGATCCACAGTATTCTATATAATTGTGGGTCAAACTTCAAACGTCTGAATTATAGCGGGTTTGTTACTGCAATATTAGAGAGAGGTGATGAAATCATCTCTGCTGCAACTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTTATTGGGACCCGCTATATGTATAGGCGCCAAGGAATGTGCCGTCGGCTTCTAGATGCCATTGAATGGGCTCTCAGCTCATTAAATGTTGAGTTGTTGGTCATTCCGGCTATCTCAGAACTCAGAGAAACTTGGACTTCTGTTTTTGGGTTTGAGTCACTTGAATCAACAAACAAGCAAATAATAAAGAACATGAATTTGTTGGTATTCCCTCACGTAGATATGTTACAGAAGAAGATATCAAAGCATAAATTTGCTGATGAAAATCTGATTCCTACAGAAGTTTCCAGTCTAAACAAGAATCATACCATATGCAATGTAGCAAATTGGGATGGGACGGGCTCATCTGGATCTGATTTGATCAATTCTACTGGGATCCCTCCCTCTAATACATGCCAGATAGATGATAAAACCATATCTATTGAATCTGGTTGTTGGCTTCCCAAGGGTTCATTGAGTAATGCACCTGATATTACTAGCAACACTATACCTCATAATAAATCTCCAAAAGATGTCACATGTCAAGTTGTATGTAAGGCAGTTCCTGAAAATTTGGCAGTGGACGATAAAAGTACTGCTAATGCACATGAGTATGTGACTGATTCTTGTGGAGCTAAAGATAGAAGTACATATAAGAATACTAGTTGCAGTTGCATCTTACTGAACCGTGATGAGAAGCCGACAGATTTGGATAGCCAATTGAACAATTGCTGTGTTCCTTATGAGGAAAAGCATTGTCTCAGTATGTCTCCTATTAACACTGAAACTACTAAAGAAGGACATAATGTTGGTGGTTTGTTGGAGGTTACTGAAAAATTTCCCAATGAGGTTGTTTCAAATAACAGCAGTGCTGAAAATCCTGCACCCGGTTGGGCTGAAAGTATTCCTATTGACTCACAAATTGTGTTTAGTACAAGGAAATCAAAAGATTCTGCTGACAGTATTTACCATGATTCACATGAGATTTCTGACAGTTGTGAACTGAGAAGCAAGATTGATTGTGTTCAACCGTACTTTATAGGATCAAAAGAAATACATGTTGAACCTGTTAATGGTTGTGGCTCTCATGCTAGACCGGATGGTGATTGTGCCTCTGGTGAAGCAGAATCATGTTCTGCCAAAACATCCAATCTGCTGACAAACATACATCCTGGAGATTGTCAATCGATACCAGTATCGTCAGGTATCTGTGTGAAGACTGCAGATGGTGTCAATGAGAAGAATAAAGAATCTAGTGTAGCTGAGGCCGATACAGATTTGCAAGTTGATCAAACTGCACGGAGCAATGCTCCATCCTTGTGGGGCCCAAACACTGCTTCTGGTGCGGCTCTTCACTGTGCATCAGCTGGCAGTACTTCATGTGGTAGTACTGAGGGGATAGTACTGTCAAACCAAGCCAGTTAA 3873 0.4139 MREGLRSRTRLGKISGNGGVVQKEKVDVKNEAFDLGGKGLGDTDLTIEKKEGVKHAVKEECDLDLEVSTSGNVDLVENENKNDKSCFREGGSIVEAEVDRKANEVLIGGRVLRSRLKRGDDKISSNGGNDGVVSGNNRGHGGFERIKVKKECVEADEFLTDSNENERVTAKKEGSDKMNLKRKRGRPPKIALEEEDQLVDQSPRKRGRPPKDGRQSHIRTVVRKGKAGLKKGKEGLTMKDSPNVNVTCSRRSSSRELKKKGFSPVNKNKFGKVSKTEINEVAAPSKSNAVNALVAEKSGKSKVKQLVRDQIMERLSAAGWTVDYRPRNGRVYNDAVYVSLDGKTHWSITLAYNRLKMHYEAGDGEGKVYRPGFEFTPIPPEDFKILTKVMNKKRKSKDKLAPFGGKGGKTVDGVNRKGKEKQSSGAGMGKSVKGKMKRKRSHLREDDTNVTSLERMLVVRDHKRHKTQNKKRCAPLVRNTEGNKDSEIDGYVLYSGKRTMLAWMIDLGAILQNGKVHYMQNRSKSALLDGKITGDGIHCGCCNEIITISDFGAHAGSKHSDPLKNIYSEEGTSLLQCLLDSWNKQDESERKGFHFVDVAGEDPNDDTCAICGDGGDLICCDGCPSTFHQSCLDVEKFPSGDWHCIYCCCKFCGLVGGSSNQRAVHDTLLTCHLCDEKYHTSCIEANVAKTDDSRDAFFCGDRCEELSKRLEMLLGVKHEIEDGFSLTFIRRSDVGFDASQIKPQIIECNSKLAVALSIMDECFLPYIDNRSGINLIHSILYNCGSNFKRLNYSGFVTAILERGDEIISAATIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLDAIEWALSSLNVELLVIPAISELRETWTSVFGFESLESTNKQIIKNMNLLVFPHVDMLQKKISKHKFADENLIPTEVSSLNKNHTICNVANWDGTGSSGSDLINSTGIPPSNTCQIDDKTISIESGCWLPKGSLSNAPDITSNTIPHNKSPKDVTCQVVCKAVPENLAVDDKSTANAHEYVTDSCGAKDRSTYKNTSCSCILLNRDEKPTDLDSQLNNCCVPYEEKHCLSMSPINTETTKEGHNVGGLLEVTEKFPNEVVSNNSSAENPAPGWAESIPIDSQIVFSTRKSKDSADSIYHDSHEISDSCELRSKIDCVQPYFIGSKEIHVEPVNGCGSHARPDGDCASGEAESCSAKTSNLLTNIHPGDCQSIPVSSGICVKTADGVNEKNKESSVAEADTDLQVDQTARSNAPSLWGPNTASGAALHCASAGSTSCGSTEGIVLSNQAS* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01345 1290 MobiDBLite consensus disorder prediction 119 141 - -
Rops6g01345 1290 MobiDBLite consensus disorder prediction 164 263 - -
Rops6g01345 1290 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 743 903 IPR000182 GO:0016747
Rops6g01345 1290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 667 IPR013083 -
Rops6g01345 1290 CDD PHD1_AIRE 608 647 - -
Rops6g01345 1290 SMART PHD_3 607 648 IPR001965 -
Rops6g01345 1290 SMART PHD_3 649 704 IPR001965 -
Rops6g01345 1290 MobiDBLite consensus disorder prediction 396 447 - -
Rops6g01345 1290 PANTHER PHD FINGER PROTEIN 12 283 1068 IPR042163 GO:0003714|GO:0045892
Rops6g01345 1290 MobiDBLite consensus disorder prediction 164 219 - -
Rops6g01345 1290 ProSiteProfiles Zinc finger PHD-type profile. 605 650 IPR019787 -
Rops6g01345 1290 Pfam Tify domain binding domain 530 579 IPR032308 -
Rops6g01345 1290 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Rops6g01345 1290 SMART AT_hook_2 203 215 IPR017956 GO:0003677
Rops6g01345 1290 SUPERFAMILY FYVE/PHD zinc finger 601 654 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01345 Rops-Chr6 28924615 28933991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01345 176 910 PHD Transcription Factor Family AT5G36670 41.276 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01345 - - gmx:100784172 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01345 6 28924615 28933991 Rops6g01345 6 28924615 28933991 ECH