Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01328 ATGGAACAGTACGAGATTCTAGAACAGATTGGCAAAGGTTCATTTGCTTCTGCTCTGCTTGTCAGGCACAAGCACGAAAACAAAAAGTATGTCCTGAAGAAGATCCGCCTTGCCCGCCAGACTGACAGAACCCGTGGATCTGCCCACCAGGAGATGGAGCTTATCTCTAAAGTTCGAAATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGCTTTGTGTGTATCATCATTGGCTATTGTGAAGGAGGAGATATAGCTGAAGCTATTAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAGAAGCTCTGTAAGTGGCTTGTTCAACTGCTGATGGCACTTGATTACTTGCATGCAAATCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAATATCAAGATATACGTTTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGACGATCTTACTTCCTCGGTTGTGGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCCAAGTCAGATATTTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAGCCAGCTTTTAAGGCTCTTGATATGCAAACATTGATTAACAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACCGTGTATTCTGGTTCTTTTCGAGGCCTTGTGAAGAGTATGCTGCGGAAAAATCCAGAGCTTCGGCCAAGTGCTGCAGAGTTACTAAATCATCCACATCTTCAACCTTACATTCATAAAATTCACCTAAAACTAAATAGCCCCAGAAGAAATACTTTTCCATTCCAATGGCCTCACTCAAGCTATGCAAGGAGAACTCGGTTTGCAGAGCCAAAATCTGTTTCCACTCTTACTGACAGACATAAACGGTTGTCATTCAGTAACGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAACTAGATTCTGTGTGTTCTACTCAAAGAGCACGAGGATTCTCTGTTTGTTCAAAAGAGAAACAGTATGAACTAACTGTTGGCTGTGTCCGTGAAGAATGCAAAACTAACAAGTCAAAAGACACAAAGTTATCAACTGTTGATAGGATGCCAAGATTGAGAGCAGCTAAGGAGTCTGCCACCCCCCGACAACGCACATTCCCATCACAGATATCCCATACTGATTCCAAGCGTGATTCGCTTCCAGCATCTTCTACATCAGCTGAGACGACGGAGATGGAGGAAGCCGAGACTGAAATCATAGATCTATTCGAGCTTCCCTATTCCGAATTATGTTCTTCAGATTCAACCAAAGTGAGTTCCATTATGGAAGCCCTAGGAGCCAATGGTCCAGGCCTTCTCGCCATCACCGGCGTCCCCAACGCCTCCAAAATCCGCTCCTACCTTCTCCCACTCGCTCGAAAACTCGCTCTTCTCGACCACGAAACCCGTAAACGCATCCTCAAGGAGCACAACTTGGGTAGCGACGTTCCTTTGAGAAACCCTAATAGGAGTGTATCTTCCTTTGCCATGCCACTCAAATATGCTAAAAAGTTGTCTGATTCTGAAGAGAGTACTCAATGTTATGGTGTTGGATTTGAGAATCTTGGAAGTGCTTTTCAAGAGTTAGGGTTTTGCATGATGGAGCTTGGGCTTTGTCTTGCTCGGATATGTGATAAGGCTATTGGTGGTAATGAGTTAGAGCAGAGTCTTTTGGAATCCTCTGCTGCTAAGGGTCGTCTTATTCATTATCATTCATCTTTAGATGCCATTATCCTTAAACAACTTGAGAGGAGCAAAAAAGCGGCCAAGAATGTTAAGAAATTAGAAGGGTCTCATTGGAATTCAATTGCCCATGATGATAATTCATGTGGGGTTCATTCCAATTTGTGGCAGCAGTGGCATTATGATTATGGTATATTCACTGTTCTCACAGCTCCCTTATTTCTCTTGCCATCTTATTCAGAGACAAGTAAAACGGAAGATCCATTGTGTTGTCATGAATGTTCATCACCAACTGGGCATACATCCTTGCAGATTTATGATCCCAATAAGAAAAGGGTCCTTATGGTGAGGGCCCCTCCTGAAAGTCTTATCATTCAAGTTGGGGAATCTGCTGATATAATCTCAAAAGGGAAGCTTCGATCAACCCTCCACTCTGTTCATAGACCTTCAAAGTTTCAAAATTTGAGCAGAGAAACTTTTGTTGTGTTTCTGCAGCCTGCATGGACTAAAACATTCTCTATCTCTGATTATCCTTGTGCAAACTCGACTTTTAATGGGTTTGGTGATCATTGTTTAGTGGCTTCTGATGATGAGCAACAGTCTGGGCAAGATAATAATAAAGTAAGTCACGAGATTCGGAAAATAGTTCCCCCACTTTCATCACGGTTGAAGGATGGGATGACTTTTGCTGAGTTCTCACGTGAAACAACAAAGCAGTATTATGGTGGTAGTGGTTTGCAATCAAATAGATGA 2487 0.423 MEQYEILEQIGKGSFASALLVRHKHENKKYVLKKIRLARQTDRTRGSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDIAEAIKKANGVHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKYQDIRLGDFGLAKMLTCDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQTLINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYIHKIHLKLNSPRRNTFPFQWPHSSYARRTRFAEPKSVSTLTDRHKRLSFSNDRALNPSISGTELDSVCSTQRARGFSVCSKEKQYELTVGCVREECKTNKSKDTKLSTVDRMPRLRAAKESATPRQRTFPSQISHTDSKRDSLPASSTSAETTEMEEAETEIIDLFELPYSELCSSDSTKVSSIMEALGANGPGLLAITGVPNASKIRSYLLPLARKLALLDHETRKRILKEHNLGSDVPLRNPNRSVSSFAMPLKYAKKLSDSEESTQCYGVGFENLGSAFQELGFCMMELGLCLARICDKAIGGNELEQSLLESSAAKGRLIHYHSSLDAIILKQLERSKKAAKNVKKLEGSHWNSIAHDDNSCGVHSNLWQQWHYDYGIFTVLTAPLFLLPSYSETSKTEDPLCCHECSSPTGHTSLQIYDPNKKRVLMVRAPPESLIIQVGESADIISKGKLRSTLHSVHRPSKFQNLSRETFVVFLQPAWTKTFSISDYPCANSTFNGFGDHCLVASDDEQQSGQDNNKVSHEIRKIVPPLSSRLKDGMTFAEFSRETTKQYYGGSGLQSNR* 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01328 828 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Rops6g01328 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Rops6g01328 828 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01328 828 Gene3D - 423 763 IPR027443 -
Rops6g01328 828 Gene3D Transferase(Phosphotransferase) domain 1 86 315 - -
Rops6g01328 828 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Rops6g01328 828 SUPERFAMILY Protein kinase-like (PK-like) 1 312 IPR011009 -
Rops6g01328 828 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Rops6g01328 828 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 572 - -
Rops6g01328 828 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01328 828 CDD STKc_Nek 3 258 - -
Rops6g01328 828 MobiDBLite consensus disorder prediction 376 417 - -
Rops6g01328 828 SUPERFAMILY Clavaminate synthase-like 432 821 - -
Rops6g01328 828 MobiDBLite consensus disorder prediction 385 414 - -
Rops6g01328 828 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Rops6g01328 828 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01328 Rops-Chr6 28678737 28684149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01328 10 289 MAP Kinase Kinase Kinase AT1G53570 28.667 2.68e-34 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Rops6g01328 Pkinase 4.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01328 K08857 - gmx:100810347 735.717