Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01323 ATGACTTCACGCGAAGAGTGTGTGCACTGCAATGGGCATCATTCTTCGGTACCTTTAAACTTCTCATCTCAATTCCCAAACATGATTCTAAAGATTCCACCACAGCACCTATTATTCACGTTAGGGTTTCTGCTCTCTGCCACAATCCCCTTCGCTCTCGGGGAATCTTCCACCTGCTTGACGGTCTACAAGAACGGCGGTGCTCCCGCGGTGTTCCAATCCCCAAAATGCCCCCGCTGGAAGCTCTCCGATTACGATTCTCCTCCCCAAACGACATCGCGTTGCCAGTCCGCAATACTCCAGGGCCGCAGAAACTCCCAAGAGGATCGCACTCTCTGCATCCTCGATCTTCGCATTCCCTTCCCCGATGCGAATGGTATCAAGGAGGTTGTGGTTGGGATTGTGGCTGTTTTCGATGGGCATAACGGTGCAGAAGCTAGTGAAATGGCGTCCAAACTTTTGCTTGAGTATTTCGTTCTGCATACTTATTTTCTTCTTGATGCTACGTATTCTGTTATATCCAAGACGTCGTCGAGAACATTGCTTCACAAGAGAGATCGTGATCACGTAAACGTAATGCATAGATGGAAAGAGATTCTAGGTTTGCAATGGCATGAACTGCATTCTGAAAGGTTTCAGAATACATTTTCTGCAAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTGTTGAGGGCAATCCATGATATTGACGCAAAATTTTCAGAAGAAGCCTCTAGAAAGAGTCTTCATTCAGGATCTACGGCAACCATTGTATTGGTTGCAGATGACAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCCTTCTTGTGCTCTGAAAATTTTCAGTCTCCTAGAGAGGCTAAAGCCTCATTGTTAAAGCTATATAGGCAGAAAGAACATGATGGTTCTGTTTCCATGTGGGATCGTGAAAAGTACAGATTGGCTTCTTCCCATGGACTCGCTCATTTTGCAGTAAAGGAATTGACCAGTGATCATCATCCAGACAGAGATGATGAAAGAATTCGGGTGGAAACAGCTGGTGGTCAGGTTCTAAATTGGGGTGGTTTGCCTCGCATAAATGGTCAGCTGGCTATTACGCGGGCTATTGGTGATGTGTTCTTTAAAAGTTATGGTGTTATATCTGTACCAGAAGTGACTGATTGGCAGCCTCTGACTGCTAATGATAGCTATTTGGTGGCTGCATCTGATGGTGTATTTGAGAAGATGAGTGTGCAGGATGTCTGTGATTTGTTGTGGGAAGTACACCGTTTCAGTAACATGAGATCAGAGTGTATCCCTTCATCTTCCTATTCATTGGCAGATTTTATTGTTAATACTGCCTTCAAAAAGGGCAGTATGGACAATATGGCTGCAGTTGTCATTCCTCTGGAATCTTCCAAATCTTCTGCAAACTCACTAAGAAGAAGCTATATTGAAAAGAGGGATGCAGGTTTCCCATCACTTGGTCAGCAGGAACCTGGTTCCAGAAGCTCAGCTAATGACATCACATCTGATCTAATGCACTGGGAGCATCCTCATCTGGTAGATACCAAGCTTAAGCGAATATTGGTTGAAGTGAAACATGGTGATTTTGAATGTTTTTATTTATCTGAAAATCTCGACGAACCAGTGGCCTCTAAGCAGCCTGCAAAAAAAACCAACTGTGAAGACTATTTGTATGAACTACCTCAGCCTCTACCAGATGCCCTTCATCAACATGCTGCAGTAGATGGTCCTCTAAGTTTGTACAACAACCAAAACTTTTGCTTTCACCTTGGTCTGACTGTCAATGAAGCCAATGAACAATGCATAAATCCTGAAGGCTTTGCCAGATTTATTGGTATTCTAGAATCAATTCCTTTACATGATACTGATTCAAATAATGGGTCATCTGATTATTCAATGCCTGATTTGAGGTATGTATTAAGGAAGAGTTTTGGCCGTGGATCATATGGTGAAGTGTGGTTGGCTTTTCATTGGAATTGTAATCAAGGTAATAATACTGCAAAAATGAGCAAGGATGACAATAATAGAAACAGCAGCTCAACTACTCCTGATTGCGGGGACGGTCCTTCTAACTACACCCTATATATTTTGAAACGTATAATGGTAGAGAGAGGGTCTGCTGTTTACTTAAGTGGGCTGAGGGAGAAGTATTTTGGAGAAATTTTCTTAAATGCCTCTACATGCTTTGAAGATCTGCTATCAACTGGAAAATCAAACTGTGTCTTGGAAACATCACAATTTGGTTACGAGAATTCTTTTCCAAACAAGTTTAGACCACAAAGAGCCATTTATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAGTCTTTTGAGTCTCGATCCAATGAAATATGGCTTGTATTCAGTTATGAAGGAGTGTCATTGTCAAAACTTTTATATTCTGTGGAAGATGCATATGATACTGCTGAGAAAGAAAGACACGAGCAAATAAAACATGTTCAGATACTACGTCCATCAAAGTGGTGGCATTGGTTGAAAAAAACTGAAGAAGGGCAAGAGGAAATGCGCAACCTTATCTGGCAATTGTTATTGGCACTGAAGTCCTGCCACGATCGCAATATCACACACAGGGACATTAAACCTGAGAATATGGTGATATGCTTTGAAGATCAGGAGACAGGGAGATGCTTGAAAGAGATTCCAACAAAAATTGATAAATTTTCCACCAAAATGCGTATTATTGACTTTGGAAGTGGAATTGATGAATTCACATTAAAGCATTTTTATGGTTCTACTGGGCCTTCAAGAGCTGAACAAACTCACGAGTATACACCTCCCGAAGCTTTGCTAAATGCTACATGGTATCAAGGGCCAACAAGCTCCACTTTGAAATATGACATGTGGAGCGTTGGTGTTGTGATGTTAGAGTTGATCTTAGGGACACCAAATGTTTTTCAGATAAATGCTTTGACACGTGCTCTTTTGGACCGGCATCTTGAGGGCTGGAATGAGGGTGTGAAGGAGCTGGCATACAAACTTAGATCGTTCATGGAATTGTGCATCTTAATCCCTGGGATTTCTGGCAGTTCCTCAAAAAAGTATCACACAGTGAATCAAGTTGGAGCTTCACCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTCGTCAAATTAAGACTAGAGATCCTCTTAAAATAGGTTTTTCAAACATCTGGGCTCTACGGTTAGTACGCCACCTGTTACAATGGGACCCAGAGGATCGGCCAAGTGTGGATGAGGCACTACGGCATCCCTATTTCCAACCTCCCCCAAGAGGATGA 3306 0.4204 MTSREECVHCNGHHSSVPLNFSSQFPNMILKIPPQHLLFTLGFLLSATIPFALGESSTCLTVYKNGGAPAVFQSPKCPRWKLSDYDSPPQTTSRCQSAILQGRRNSQEDRTLCILDLRIPFPDANGIKEVVVGIVAVFDGHNGAEASEMASKLLLEYFVLHTYFLLDATYSVISKTSSRTLLHKRDRDHVNVMHRWKEILGLQWHELHSERFQNTFSANFDDSFHLEILKEALLRAIHDIDAKFSEEASRKSLHSGSTATIVLVADDKILVANIGDSKAFLCSENFQSPREAKASLLKLYRQKEHDGSVSMWDREKYRLASSHGLAHFAVKELTSDHHPDRDDERIRVETAGGQVLNWGGLPRINGQLAITRAIGDVFFKSYGVISVPEVTDWQPLTANDSYLVAASDGVFEKMSVQDVCDLLWEVHRFSNMRSECIPSSSYSLADFIVNTAFKKGSMDNMAAVVIPLESSKSSANSLRRSYIEKRDAGFPSLGQQEPGSRSSANDITSDLMHWEHPHLVDTKLKRILVEVKHGDFECFYLSENLDEPVASKQPAKKTNCEDYLYELPQPLPDALHQHAAVDGPLSLYNNQNFCFHLGLTVNEANEQCINPEGFARFIGILESIPLHDTDSNNGSSDYSMPDLRYVLRKSFGRGSYGEVWLAFHWNCNQGNNTAKMSKDDNNRNSSSTTPDCGDGPSNYTLYILKRIMVERGSAVYLSGLREKYFGEIFLNASTCFEDLLSTGKSNCVLETSQFGYENSFPNKFRPQRAIYEEGLNHIARYVESFESRSNEIWLVFSYEGVSLSKLLYSVEDAYDTAEKERHEQIKHVQILRPSKWWHWLKKTEEGQEEMRNLIWQLLLALKSCHDRNITHRDIKPENMVICFEDQETGRCLKEIPTKIDKFSTKMRIIDFGSGIDEFTLKHFYGSTGPSRAEQTHEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLELILGTPNVFQINALTRALLDRHLEGWNEGVKELAYKLRSFMELCILIPGISGSSSKKYHTVNQVGASPASWKCSEEFFSRQIKTRDPLKIGFSNIWALRLVRHLLQWDPEDRPSVDEALRHPYFQPPPRG* 1102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01323 1101 SUPERFAMILY PP2C-like 93 469 IPR036457 -
Rops6g01323 1101 Pfam Protein kinase domain 839 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01323 1101 PANTHER PROTEIN PHOSPHATASE 88 467 IPR015655 GO:0004722|GO:0006470
Rops6g01323 1101 ProSiteProfiles PPM-type phosphatase domain profile. 94 468 IPR001932 -
Rops6g01323 1101 Gene3D Transferase(Phosphotransferase) domain 1 831 1096 - -
Rops6g01323 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 869 881 IPR008271 GO:0004672|GO:0006468
Rops6g01323 1101 FunFam uncharacterized protein LOC106771884 isoform X8 835 1096 - -
Rops6g01323 1101 SUPERFAMILY Protein kinase-like (PK-like) 644 1097 IPR011009 -
Rops6g01323 1101 SMART serkin_6 645 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01323 1101 SMART PP2C_4 86 466 IPR001932 -
Rops6g01323 1101 Pfam Protein phosphatase 2C 185 461 IPR001932 -
Rops6g01323 1101 Gene3D - 90 476 IPR036457 -
Rops6g01323 1101 ProSiteProfiles Protein kinase domain profile. 645 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01323 1101 CDD PP2Cc 94 468 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01323 Rops-Chr6 28621412 28648255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01323 709 1099 PP2C-type Phosphatase Gene Family AT3G63340 66.582 2.65e-180 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Rops6g01323 Pkinase 2.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01323 - - gmx:100781476 1916.74