Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01321 ATGTTCCCCGCAGTTATGTCCAATTCTATTTCTTTGTCTGAAGAAGCCAGTGTCTCTTCTGGTATAAGAATTCAGGACTCGGGTAGATTAAATCACCTTGTCACAAACATTACTCCTCAGCAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCGTTATCCCCAAAGACCCTTCTAGCTACCAATAGATTTGTATGTGAGGTTTGCAACAAGGGTTTCCAGAGAGATCAGAATCTTCAGCTTCATAGAAGAGGCCATAACCTTCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTCAAAAAGAGAGTCTACGTTTGTCCAGAACCTTCATGTGTTCACCACAACCCCTCAAGGGCTCTTGGGGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGGGAGAGGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAGTATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAACCAATTAGTAGCCACCACCACCACCACCATAAACCCATCACTCCACTCTCTCTTCCTTTTCCCAACCCAAAATAACTTCCAAAACCACATCACCGGCTTCAACCCTTGGGACCCATCTCAACAAAACCCTAACCCTAGCAACCTTACTGCTCCACTCCACAACATCAAGCCTGAAGTTCAAAACTTTCAGATACCCAACAATTACCTCTCTTCTTCTCCACCATTCCTTCAACACCCCAAGAGCATGATAACTCAACCCTCCTCCAATGTTGCCACGTCAGCACACCTCTCAGCCACTGCACTGCTCCAGAAGGCTGCAACCTTTGGTGCCGCTGCCATCACAGGCCCACGTGCTAATCATGTGACTCAGCTCAGCATGGGCGAGTTTGGATCGGTGACTCAGCTTGACTCGATGGTTCCTGATCACTACATCAACATGAGAGGGCTCAAGAACGATCGTCTCACAAGGGACTTTCTGGGACTCACCGGTGATGCTAACGGCGGCGCGGTTGACGTTAGTGTAAACGTGAAGGATATGCTAACGTTCACAGGGAGTGTAGAGTACCACCAACAACAACCTTATGAGAACCATCACAACTCACTGTTCAAGTCCCAACAAGGTTTTCGATTCCTTGGGACAACCGCTGCCCCAGAATCGTGGGGGAATTGTTAG 1308 0.4671 MFPAVMSNSISLSEEASVSSGIRIQDSGRLNHLVTNITPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEVCNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRVYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGERKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARMSANQLVATTTTTINPSLHSLFLFPTQNNFQNHITGFNPWDPSQQNPNPSNLTAPLHNIKPEVQNFQIPNNYLSSSPPFLQHPKSMITQPSSNVATSAHLSATALLQKAATFGAAAITGPRANHVTQLSMGEFGSVTQLDSMVPDHYINMRGLKNDRLTRDFLGLTGDANGGAVDVSVNVKDMLTFTGSVEYHQQQPYENHHNSLFKSQQGFRFLGTTAAPESWGNC* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01321 435 Gene3D Classic Zinc Finger 54 122 - -
Rops6g01321 435 Gene3D Classic Zinc Finger 144 211 - -
Rops6g01321 435 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 398 IPR031140 -
Rops6g01321 435 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Rops6g01321 435 MobiDBLite consensus disorder prediction 39 58 - -
Rops6g01321 435 FunFam protein indeterminate-domain 12-like 54 122 - -
Rops6g01321 435 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Rops6g01321 435 Pfam Zinc finger, C2H2 type 75 97 IPR013087 -
Rops6g01321 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Rops6g01321 435 SMART c2h2final6 151 171 IPR013087 -
Rops6g01321 435 SMART c2h2final6 75 97 IPR013087 -
Rops6g01321 435 SMART c2h2final6 116 146 IPR013087 -
Rops6g01321 435 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01321 Rops-Chr6 28594134 28597527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01321 15 428 IDZ Gene Family AT4G02670 51.724 7.31e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01321 zf-C2H2 0.0065 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01321 K25870 - gmx:100780056 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01321 6 28594134 28597527 Rops8g03040 8 67519871 67523805 PCT