Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01294 ATGGCGAATCACCCTTCTGAGGCTCCTGCCGATGATTTCCTGGAGCAAATTCTAGGCCTTCAGAGTTTCGCTTCCACCGACGGAACTGACGCTTCTTCCTTGGCCGCTCCGATGATGCTGCAGCTCAACTCCGGCGATGCCGCCGCCGCCTCACACCTCGCCACCGGAACTGGTTTCCATGCACCGGTTTACCCGTTGGGGCTGAGCTTGGACCAGGGCAAAGGAGGGTTCTTGAAACCCGATGATGCTTCTGGAAGTGGCAAGCGCTTCCGAGAGGATGTTGTTGATACCAGACCTAAGAATGCTTTTCATGGGCAACCCATGCCTACTACCATTCCTACTGCTCCACATCCACCAGCAATGCGCCCTAGAGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCCGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTGGTTCCTAGTGTCAACAAGACAGACAGAGCTGCCATGCTGGATGAAATTGTGGATTATGTCAAGTTCTTGAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCACCGCTGGTAACTGACATCCCATTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGAAGAAACCAACCAGCTTGGGAGAAGTGGTCAAATGATGGCACAGAAAGACAGGTAGCTAAGCTCATGGAAGAAAATGTTGGGGCTGCCATGCAGTTCCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAGTCACAACCATCAGACACCTCTAGTATAGTTAAGCCTGAAAATACTCCTCCTTCATAG 864 0.5127 MANHPSEAPADDFLEQILGLQSFASTDGTDASSLAAPMMLQLNSGDAAAASHLATGTGFHAPVYPLGLSLDQGKGGFLKPDDASGSGKRFREDVVDTRPKNAFHGQPMPTTIPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDTSSIVKPENTPPS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01294 287 FunFam Basic helix-loop-helix transcription factor 126 188 - -
Rops6g01294 287 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 129 190 IPR036638 GO:0046983
Rops6g01294 287 Gene3D - 126 188 IPR036638 GO:0046983
Rops6g01294 287 MobiDBLite consensus disorder prediction 99 135 - -
Rops6g01294 287 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Rops6g01294 287 Pfam Helix-loop-helix DNA-binding domain 136 180 IPR011598 GO:0046983
Rops6g01294 287 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 75 266 - -
Rops6g01294 287 MobiDBLite consensus disorder prediction 211 230 - -
Rops6g01294 287 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01294 Rops-Chr6 28206793 28211450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01294 59 286 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.277 1.62e-121 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01294 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01294 - - gmx:100793177 445.277