Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01292 ATGGAGAGTTGTGAATCAGAGCTGAATCTCAAGGCCACAGAGTTAAGGTTGGGGTTACCCGGAAGCGATGAGCCTGAGAAACTTTCTGTTGTTAGAAGCAACAAGAGATCTTCACCTGAGGCCAGTGAGGAATTGTCCATCAATGTAAATAATTCTAATGGTTGTTCTTCTGATACCAAAAATGAACAAGACGATGCCCCACGTGCAAAGGCACAAGTAGTGGGATGGCCACCAATTCGATCTTTTAGGAAGAATAGTCTGCAACAGAAGAAGGGTGATGTGGCTGAAGGGACTGGGATGTACGTGAAAGTGAGCATGGCGGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGACTTACCCAGAACTCCTTAAAGCCTTGGAAGATATGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGCTACAATGGATCTGAATATGCTCCAACTTATGAAGACAAGGATGGTGATTGGATGCTGGTTGGAGACGTTCCATGGCACATGTTTATGTCCTCCTGCAAGAGGCTGAGAATTATGAAAGGATCAGAAGCTAAGGGGTTGGGTTGTTTTTGA 588 0.4439 MESCESELNLKATELRLGLPGSDEPEKLSVVRSNKRSSPEASEELSINVNNSNGCSSDTKNEQDDAPRAKAQVVGWPPIRSFRKNSLQQKKGDVAEGTGMYVKVSMAGAPYLRKIDLKVYKTYPELLKALEDMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWHMFMSSCKRLRIMKGSEAKGLGCF* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01292 195 FunFam Auxin-responsive protein 94 195 - -
Rops6g01292 195 Pfam AUX/IAA family 34 193 IPR033389 -
Rops6g01292 195 SUPERFAMILY CAD & PB1 domains 94 185 - -
Rops6g01292 195 Gene3D - 94 195 - -
Rops6g01292 195 ProSiteProfiles PB1 domain profile. 99 186 IPR000270 GO:0005515
Rops6g01292 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 190 IPR003311 GO:0005634|GO:0006355
Rops6g01292 195 MobiDBLite consensus disorder prediction 15 69 - -
Rops6g01292 195 MobiDBLite consensus disorder prediction 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01292 Rops-Chr6 28194983 28196437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01292 85 192 B3 DNA Binding Superfamily AT2G46530 36.111 6.31e-12 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g01292 AUX_IAA 1.5e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01292 K14484 - gmx:100780752 316.235