Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01291 ATGGAAGTTGGCCTGAAGAAGGAGAAGATGGTGTTTGAGGAAACTGAGCTCAGGCTTGGGTTGCCTGGAAATGGAGCCAAACCCACTGAAGCAGAAGGAGTAAGGAAGAGAGGATTCTCTGAAACTGAGACTGAAACAACAACCACTGTGGATTTGATGCTTAACCTCTCCCCAAAGGAAGGAGCTGCTGCTGCTGGTGCAGATCCACGTGACAAGCCTAAGAATTCGCCTAACGAGAAGACCCTTCTGCTTGCTGATTCCGCCAAGCCTCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCAGTGCGGTCCTTCCGGAAGAACATGTTTGCAGCCCAAAAGAGTAGCGGAGAAGAAAGTGAGAAGAATAGCCCTAATGCAAGCTTTATCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGCTGTACAAGAGTTACCCAGAAATCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTTACCAATGGAAATTGCGAATCCCAAGGAATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTTTTGAATAGCTCCGATTATGTCCCAACCTATGAAGACAAGGATGGCGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTCGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCATGGAGAAATGCAAGACCAGGAGCTAG 738 0.4756 MEVGLKKEKMVFEETELRLGLPGNGAKPTEAEGVRKRGFSETETETTTTVDLMLNLSPKEGAAAAGADPRDKPKNSPNEKTLLLADSAKPPAKAQVVGWPPVRSFRKNMFAAQKSSGEESEKNSPNASFIKVSMDGAPYLRKVDLKLYKSYPEISDALGKMFSSFTNGNCESQGIKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKTRS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01291 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 232 IPR003311 GO:0005634|GO:0006355
Rops6g01291 245 Gene3D - 121 239 - -
Rops6g01291 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Rops6g01291 245 FunFam Auxin-responsive protein 122 237 - -
Rops6g01291 245 Pfam AUX/IAA family 14 236 IPR033389 -
Rops6g01291 245 MobiDBLite consensus disorder prediction 20 93 - -
Rops6g01291 245 SUPERFAMILY CAD & PB1 domains 122 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01291 Rops-Chr6 28162872 28165644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01291 115 230 B3 DNA Binding Superfamily AT3G61830 33.621 8.57e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops6g01291 AUX_IAA 7.5e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01291 K14484 - gmx:100780214 403.29