Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01283 ATGATAGAGGCTAATATGGAAGAGGTTGAACAAGCTAATAGAGCAGCTGTTGAAAGCTGTCATAGAGTTCTAAGTATGTTGTCTCAGCCCCGGGATCAGATTCAGCATAGGAATTTAGTGTTGGGAACTGAGGAAGCTGTTTTGAGGTTCAAGAAAGTTGTTTCCTTGCTTCATGATGGTTTGGGTCATGCAAGAGTTAGGAAGGTTAAAAAACTTCAAGCCCCTTTTTCCCAAAGTATCTTCTTAGACAACCCAAATTACAGAACCAACCATCACTCCAAAAATCTGCAGTTTCCCCAAACCAGTTTTCCTGACAATTCAATTCAGGAACTAGGTTCAACCATAAAAAATTCACTCTCTCTTGGAAACCCATCTTTGGAATTGAGCTCCAGTGGGAAAAATCCTCTTCACCTAACCCAACAAGCTTCATCAACTCACTATCACTTCTTACAGCAGCAGCAGCAGCAACAACAACGACAAAGGTTGTTGCTGCAACAGCAACAAATGAAGCATCAAGCAGAAATGATGTTCCGAAGGAACAACAGTGGCATAAATCTGAGTTTTGACAACACTAGCTGCACACCAACAATTTCATCGACTAGGTCTTTCATTTCTTCCTTGAGTATAGATGGAAGCGTAGCTAACTTAGATGGAAGTGCCTTCCATTTAATAGGAGCTCCACACTCTTCTGATCAGAATCCACAACAGCACAAGAGAAAATGTTCTGCCAGAGGTGATGAAGGAAGCTTGAAATGTGGGAGCAGTGCTAGGTGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATTCCTCCTGATGATTATTCATGGAGGAAGTATGGGCAGAAGCCAATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGCTGTCCTGCTAGGAAGCATGTTGAGAGGTGCTTGGAAGAGCCTACCATGCTGATTGTAACCTATGAAGGGGAGCATAACCACCCTAAGTTACCAACACAATCTGCAAATGCATGA 1062 0.4303 MIEANMEEVEQANRAAVESCHRVLSMLSQPRDQIQHRNLVLGTEEAVLRFKKVVSLLHDGLGHARVRKVKKLQAPFSQSIFLDNPNYRTNHHSKNLQFPQTSFPDNSIQELGSTIKNSLSLGNPSLELSSSGKNPLHLTQQASSTHYHFLQQQQQQQQRQRLLLQQQQMKHQAEMMFRRNNSGINLSFDNTSCTPTISSTRSFISSLSIDGSVANLDGSAFHLIGAPHSSDQNPQQHKRKCSARGDEGSLKCGSSARCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQSANA* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01283 353 Gene3D WRKY domain 270 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops6g01283 353 MobiDBLite consensus disorder prediction 226 247 - -
Rops6g01283 353 Pfam Plant zinc cluster domain 238 283 IPR018872 -
Rops6g01283 353 ProSiteProfiles WRKY domain profile. 280 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g01283 353 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 351 IPR044810 GO:0003700
Rops6g01283 353 FunFam WRKY transcription factor 65 269 346 - -
Rops6g01283 353 SMART WRKY_cls 285 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g01283 353 Pfam WRKY DNA -binding domain 287 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops6g01283 353 Coils Coil 150 170 - -
Rops6g01283 353 SUPERFAMILY WRKY DNA-binding domain 283 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01283 Rops-Chr6 28007833 28010137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01283 6 350 WRKY Transcription Factor Family AT2G30590 57.592 1.29e-130 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops6g01283 WRKY 5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01283 - - gmx:100170681 611.683