Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01281 ATGGCGACGGAAGAACTCACTGTTGCGGTGGAACATGTTCCCGAACCAACCATCGCCGAACCACCACCCGAGGAAAAAGAGGAATCCAAACCTTCCAAGGCCAAGAAAACCAGGGAACCAAAACCTAAGAAGGTTTCCAAGCCACGAAGCCCTCCTTCTCATCCTACTTACGAAGAGATGATTAAGGATGCGATTGTGACGTTGAAGGAGAAAACCGGTTCGAGCCAATACGCTATTGCGAAGTTCATTGAAGAGAAGCAGAAACAGCTTCCACCGAACTTTAGGAAGCTTTTGCTCTTCCATTTGAAGAAGCATGTTGCTTCTGGAAAGCTCGTGAAGGTTAAAGGTTCCTTCAAGCTTTCACCGGCGACAAAGCCGTCGTCAACAACTGTTTCTTCAAAAACAACCAAGCCCGCAGCCGCCAAGCCCAAGCCCAAGCCCAAGCCCAAAACATCTACCAAGGCCTCAAAGACAACCAAGGCAGCAGCGGCTAAACCCAAACCCAAGCCCAAGACAGCCTTGAAGCCAAAGGCCAAGGCTGCGGCCAAGCCCAAGGTTGTGGCTAAGCCCAAAGCTGCTGCTTCCAAGCCCAAGCCTGCCGCTGCCAAGCCCAAAGCTGGTGTCAAGCCCAAGGCAGGTGTGAAACCGAAGCCCAAGGAGAGACCGGCGAAGGCCGCGAGGACCTCGACGAGGACATCGCCGGGGAAGAAAGCTCCTGCTACGAAGCCAGCACCGAAGAAACCTGCTGCGGTTAAGAAAGCTCCGGTGAAGAGCGTGAAGCCGAAGAGTGTAAAGTCTCCGGCGAAGAAGGTAGCAGCCAAGAGAGGGGGAAGGAAGTGA 840 0.5357 MATEELTVAVEHVPEPTIAEPPPEEKEESKPSKAKKTREPKPKKVSKPRSPPSHPTYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKQKQLPPNFRKLLLFHLKKHVASGKLVKVKGSFKLSPATKPSSTTVSSKTTKPAAAKPKPKPKPKTSTKASKTTKAAAAKPKPKPKTALKPKAKAAAKPKVVAKPKAAASKPKPAAAKPKAGVKPKAGVKPKPKERPAKAARTSTRTSPGKKAPATKPAPKKPAAVKKAPVKSVKPKSVKSPAKKVAAKRGGRK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01281 279 CDD H15 51 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g01281 279 MobiDBLite consensus disorder prediction 18 35 - -
Rops6g01281 279 SUPERFAMILY "Winged helix" DNA-binding domain 50 130 IPR036390 -
Rops6g01281 279 MobiDBLite consensus disorder prediction 170 184 - -
Rops6g01281 279 PANTHER HISTONE H1 24 252 - -
Rops6g01281 279 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g01281 279 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01281 279 PRINTS Histone H5 signature 165 182 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01281 279 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01281 279 PRINTS Histone H5 signature 187 206 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g01281 279 MobiDBLite consensus disorder prediction 121 137 - -
Rops6g01281 279 Pfam linker histone H1 and H5 family 54 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g01281 279 MobiDBLite consensus disorder prediction 1 58 - -
Rops6g01281 279 MobiDBLite consensus disorder prediction 111 279 - -
Rops6g01281 279 FunFam Histone H1 48 134 - -
Rops6g01281 279 Gene3D - 49 131 IPR036388 -
Rops6g01281 279 MobiDBLite consensus disorder prediction 263 279 - -
Rops6g01281 279 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01281 Rops-Chr6 27988631 27989942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01281 51 133 Single Myb Histone (SMH) Gene Family AT1G49950 40.000 9.60e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01281 K11275 - gmx:100795994 144.05