Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01278 ATGACAGACATATTTGAAAAGCAATCATCTCCTGAACCTTCAAATTATGCATCAAGCAGTAGCCTGTCTGGGGATGATAAGGAGATTGGTTATAGAGCTGCAACATGGAAGCATCGATATGTTTTGGCCAACAACTCTGCTCTTCATTTCTTGTCCATCAAAATTGACCTGAATTTCGCTCGCATGGTTATGGCAGAGGTGGTGGGTACTTTTATTTTGATGTTCTGTGTATGTGGAATCATTGCAAGCACACAATTCCAAAATGGTGCAGTGGGCCTTTTGGAGTATGCAACTACAGCAGGATTAACAGTGGTTGTGATAATTTTCTCAATAGGGCCAATATCTTGTGCTCATGTTAACCCAGCTGTCACAATAGCCTTTGCAACAATGGGTCAATTTCCATGGTTCAAGGTTCCAATTTACATAATAGCACAGACAGTAGGTTCTATGTCGGCAACATATATTGGTAGCCTTGTCTATGGCATAAAATCAGATGTTATGATGACTCACCCACTCCAAGGGTGCAACTCTGCCTTCTGGGTGGAGGTTATTGCAACTTTCATCATCATGTTCCTGGTTACAGCCTTGACATCTGAACCTCAACCAGTGGGCCATTTATCTGGCTTTGTGGCTGGTATTGCAATTGGGCTTGCTGTACTGATCACAGGGCCCGTCTCAGGTGGATCAATGAATCCTGCAAGATCATTAGGTCCAGCAATTATCTCATGGAAATTTAAGGACATATGGATATACATTCTAGCCCCCAATGTTGGAGCTGTGGCAGGAGCTCTAACATTTTGTTTCCTACGTCTTAGAGACCAACATTGCAACACTTCATTGTCCTCCCCAAACATCAGTGATGTTGGTCGTCCCATACCCTTTTGTGCAAGTTAG 894 0.4306 MTDIFEKQSSPEPSNYASSSSLSGDDKEIGYRAATWKHRYVLANNSALHFLSIKIDLNFARMVMAEVVGTFILMFCVCGIIASTQFQNGAVGLLEYATTAGLTVVVIIFSIGPISCAHVNPAVTIAFATMGQFPWFKVPIYIIAQTVGSMSATYIGSLVYGIKSDVMMTHPLQGCNSAFWVEVIATFIIMFLVTALTSEPQPVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIISWKFKDIWIYILAPNVGAVAGALTFCFLRLRDQHCNTSLSSPNISDVGRPIPFCAS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01278 297 Pfam Major intrinsic protein 58 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01278 297 ProSitePatterns MIP family signature. 118 126 IPR022357 -
Rops6g01278 297 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01278 297 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01278 297 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01278 297 PRINTS Major intrinsic protein family signature 61 80 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01278 297 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01278 297 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops6g01278 297 Gene3D Glycerol uptake facilitator protein. 28 280 IPR023271 -
Rops6g01278 297 PANTHER AQUAPORIN NIP2-1 53 281 IPR034294 -
Rops6g01278 297 MobiDBLite consensus disorder prediction 1 24 - -
Rops6g01278 297 SUPERFAMILY Aquaporin-like 57 275 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01278 Rops-Chr6 27971705 27972908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01278 61 274 Major Intrinsic Protein MIP AT5G37820 39.070 2.72e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01278 K09874 - gmx:100817660 409.068