Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01267 ATGATGGGTGAGAAGTTCTGTGTGAACGAGGAAGACAAGGGTGTGTTGGAATCTGTGTTGGGGGCAGAAGCTGTTGCTTTCTTTATTTCAGCGGTTTCCAATAATGTCTTTTCCGGTGTGGTTGCTCCTCCACCGGGTGCTTACCCGGGTCTCCGGCAGCGGTTGTGCCAGCTTGTTGAGGTTTCCAAGTGGAATTATGCTGTGTTTTGGCAAGTTGCTGGCTTGAAATCTAGTGGCTCTGCCTTGATTTGGGGTGATGGACATTGCTGCGATCCTAAAGGGGGTGGAGCCGGAGGTGGCAACTCGAGTGCTGAGGGGGAAAGGAATGGAATTGGGAAGGAGGATGAACACGAGGTGAGAAAGAAGGTGCTTCAGAAGATTGATGCCTGCTTTGGTGGGTCTGTGTCCAAAGAGGCTAATTATGCAAGGTTGGATAGGGTCTCTGATTTGCATATGTTTTACTTAACATCAATGTGTTACATATTTGGTTTTGATTCGCCGTGTGGCCCTGGCTGTTCTTTCAAGTCTGGTAAACCAATTTGGGCTTCTGATGCTGCTAAGTGTTTAAACCAATTAGAATCTAGATCGTTTCTAGGGAAATTGGCTGGTCTTCAAACTGTTGCTTTTATACCTCTAAAAGCCGGGGTTGTGGAGCTTGGTTCCACGGAAATAGTGCCTGAAGAGCAGGGTGTTCTGGAGATGGTCAGAACAACATTCGGAGAATCTAGTTCAAGTCAGGCAAAGGTGTTTCCCAAGATTTTTGGGCATGAATTAAGCCTGGGGGATCCAAAATCTCAGTCCATAACTATTAGTTTCTCCCCAAAGGTGGAAGATGATTCTGGTTTCACTTCAGATTCTTATGAAGTTCAAGCACTAGGGTCTAACCATGCTTATGGAAATTCATCCAATGGGAGTATAGGTGATAGTAATGAAGCAAAAATGCACCCTCAGTTAAATCAAATGATTACTGGGAGTTTTAATGCTCAAGGTAGGGTTTCTTGTCTAGATCTTGGTAATGAAGATTCATCCTCAACTCATCCGGATTTGCGGAAGCCCAGAAAAAGAGGTAGAAAGCCTGCCAATGGGAGAGAGGAACCACTGAACCATGTTGAAGCAGAGAGACAAAGAAGGGAGAAGCTTAACCAGAGGTTTTATGCCTTAAGAGCTGTTGTTCCTAATATATCTAAAATGGATAAGGCATCTCTGCTTGGTGATGCCATTACCTGTATCACTGATCTCCAGATGAAGATCAAAGTATTAGAAGCTGAAAAGGACACAATTAACAATAAGAATCGAAACTCACCATTGCCAGATATCGATTTTCAAGCTAGAGAGGATGATGCAGTTGTGACAGTGAGATGCCCCTTGGATATTCACCCTGTTTCTGGAGTTGTTAAAACATTCATGGAGCATCAAATTGTTGCTCCAGAGTCTAGTGTTTCAACTACAGAGGATAAGATAATTCATACATTCTCTATAAGAACTCAGGGTGGTGAGGCTGCTGCTACACAGTTGAAAGAAAAGCTTGAAGCATCCCTGTGCGAAAATTAA 1551 0.4384 MMGEKFCVNEEDKGVLESVLGAEAVAFFISAVSNNVFSGVVAPPPGAYPGLRQRLCQLVEVSKWNYAVFWQVAGLKSSGSALIWGDGHCCDPKGGGAGGGNSSAEGERNGIGKEDEHEVRKKVLQKIDACFGGSVSKEANYARLDRVSDLHMFYLTSMCYIFGFDSPCGPGCSFKSGKPIWASDAAKCLNQLESRSFLGKLAGLQTVAFIPLKAGVVELGSTEIVPEEQGVLEMVRTTFGESSSSQAKVFPKIFGHELSLGDPKSQSITISFSPKVEDDSGFTSDSYEVQALGSNHAYGNSSNGSIGDSNEAKMHPQLNQMITGSFNAQGRVSCLDLGNEDSSSTHPDLRKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITCITDLQMKIKVLEAEKDTINNKNRNSPLPDIDFQAREDDAVVTVRCPLDIHPVSGVVKTFMEHQIVAPESSVSTTEDKIIHTFSIRTQGGEAAATQLKEKLEASLCEN* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01267 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 431 IPR036638 GO:0046983
Rops6g01267 516 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 239 IPR025610 -
Rops6g01267 516 CDD bHLH_AtAIB_like 361 430 - -
Rops6g01267 516 Pfam Helix-loop-helix DNA-binding domain 368 414 IPR011598 GO:0046983
Rops6g01267 516 PANTHER MYC 49 512 IPR045084 GO:0003700|GO:0006355
Rops6g01267 516 MobiDBLite consensus disorder prediction 96 116 - -
Rops6g01267 516 MobiDBLite consensus disorder prediction 335 375 - -
Rops6g01267 516 Coils Coil 410 430 - -
Rops6g01267 516 MobiDBLite consensus disorder prediction 358 375 - -
Rops6g01267 516 SMART finulus 370 419 IPR011598 GO:0046983
Rops6g01267 516 FunFam Transcription factor bHLH13 357 431 - -
Rops6g01267 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 413 IPR011598 GO:0046983
Rops6g01267 516 Gene3D - 358 431 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01267 Rops-Chr6 27855954 27858166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01267 2 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 47.692 3.40e-155 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g01267 bHLH-MYC_N 9.3e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01267 - - gmx:100782107 836.254