Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01266 ATGGGCATCCCAGAAAACATTGTTGTCGGTTCTCATGTTTGGCTTGGAGATCCAGAGTTAGTTTGGATTGATGGACTAGTACTGAATATTAATGGAGAAGAAGCTGAAATTCAAGCTAGCAATGGGAAGAAGGTGGTTTTCCATTTGTCAAAATTATATCCCAAGGATACAGACGCTCCTACTGATGGAATTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGCAAACTAGATACAAGATCAATGAAATATATACTTATACTGGAAATATTCTTATTGCAATCAATCCCTTCCAAAGTCTTCCTCACCTATATGATGCTAATACGATGAAAAAATACAAGGGAGCAACAGTTGGAGATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTACTGAGGAGAAAAGCAACTCTATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGTGTTACCTGGCATATTTGGGTGGTCACACTGCTCCTGAAGGACGGACTGTTGAACAACAAGTTCTAGAATCAAACCCTGTTCTTGAAGCATTTGGTAACGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTCGGAAAATTTGTTGAGATTCAATTTGATAAGTATGGACGAATATCCGGTGCAGCCATCAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTGTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGCTGGGGGATCCCAGATCATTTCACTACCTTAATCAATCCAATTGCTACGAATTAGCTGGCGTTAATGCTGCTCAAGAGTATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAAGATGCAATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAATATTAAGTTTGCAAAATCAGAAGAAAATGATTCATCAGTTCTAGAAGATGAAAAATCCAAGTTCCACCTCCAAACAGCTGCAGAACTTCTCATGTGTGATCCTGATGCTTTGGAAGCTGCACTTTGTAAGCGCATGATGATTACACCGGAAGAAATCATCAAAAAAAGTCTTGATCCTCTTGGTGCAACAGTTAGCAGGGATGGTTTAGCCAAGACATTATATTCTCGTTTATTTGAATGGTTAGTCTATAAAATCAATACATCCATTGGGCAGGATCCTAGCTCAAAATGTCTTATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACTAATAGTTTTGAGCAGTTTTGTATTAATTTCACAAATGAAAAGCTGCAACAACACTTCAACCAGCATGTATTTAAGATGGAGCAGGAGGCATACACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATCATTGCTTTGCTTGATGAAGCTTGCATGTTTCCCAAGGCAACTCATGAAACCTTTTCGCAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATTAAGCCAAAATTGTCACGCTCTGACTTCACTATTGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGATCTGTTTATAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGGTTCCAAATGTTCATTTGTATCAGGCCTTTTTCCTCCACTTTCTGAGGAGGCTGCCAAATCTGCTAAGTTTTCTTCTATCGGTTCTCGTTTTAAGCTACAATTACAACAATTGATGGATACGCTCAATCTGACAGTGCCCCATTATATTAGATGTGTGAAGCCAAATAATCTATTAAAACCTAACATATTTGAGAATATGAACGTCATCCAACAATTACGCTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACAGGACCTTTCATGAATTTTTAACTCGATTAGGCATTCTTGCTCCAGAGGTTCTTCGAGGGAACTACGAAGAAAAGGATTCATGTAAAATTTTTTTGGAGAAGACCGGGCTGTCAGGTTATCAGATAGGGGAAACACAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCAGAGAGCATGCCTGCTTAGCAATTCAGCAACAGTTATCCAAAAGCAGATTAAAACTCATTTTAGTCAAAAAACATATATTGCATTGCGAAAGTCTGCTGTCTTTGTGCAATCCATTTGCAGAGGAGAATTGGCTCGGAGATCATATTATCACATGAAGAGGGAAGCAGCTGCAACCAGAATTCAAACGCACATGCGTGGAAAATTAGCCAGAAAATGGTACACCAAAATAAGGATTTCCGCCATTGTCTTGCAGACAGGTTTTCGGGCAATGGCTGCTTGTGATAAATTGAGATATAGAAAGCAAACTAGTGCATCAAGTAGTATTCAGGCTTTGGAGATTTCGGTGGAAAATGGAAGTCCTTCCGTGGAAGAATCTAAAAATTCTTTTCAAGAAGAATCCTCAAGTCCTTTCCAAGATAATGAAAGCATTGAAGCTATCAGGGATTCCTCTAGTCTCAGAGATCCAGAAAAGATTGAGGCTCTTACTGCAGAAATAAAAAACTTGAAGGTTATGTTGCAGGCAGAAAAACAAAAAGCTGATGAATATGAAAGGAAATATACAGAAGCTCAAGCTTCTAGTGAAGAGTTGCGCAAAAAGTTAGCGGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTAAGTACTTCCTCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGAGTTGATGTTGCTTCCAGTAACTCTGATACTTCATCCACAGACTCTGATTTCACATTTCCAGCACCTGTTTCAAATACAGAAGCCTTTCCTTCCTCGAAGCCAAAAACTTTTCAACTAGTAGTTCAGGATATCACTGCAGTGGATGGATCAGGATCTGAAAGTGAAAAGGAAGGTTCATTTGATGATTTCTTCTAG 3126 0.3925 MGIPENIVVGSHVWLGDPELVWIDGLVLNINGEEAEIQASNGKKVVFHLSKLYPKDTDAPTDGIDDMTKLAYLHEPGVLHNLQTRYKINEIYTYTGNILIAINPFQSLPHLYDANTMKKYKGATVGDLSPHVFAIAEAAYRAMITEEKSNSILVSGESGAGKTETTKMLMCYLAYLGGHTAPEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEENDSSVLEDEKSKFHLQTAAELLMCDPDALEAALCKRMMITPEEIIKKSLDPLGATVSRDGLAKTLYSRLFEWLVYKINTSIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEAYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKATHETFSQKLYQTFKDHKRFIKPKLSRSDFTIVHYAGEVQYQSDLFIDKNKDYVVPEHQDMLSGSKCSFVSGLFPPLSEEAAKSAKFSSIGSRFKLQLQQLMDTLNLTVPHYIRCVKPNNLLKPNIFENMNVIQQLRSGGVLEAVRIKCAGFPTHRTFHEFLTRLGILAPEVLRGNYEEKDSCKIFLEKTGLSGYQIGETQIFLRAGQMAELDAQRACLLSNSATVIQKQIKTHFSQKTYIALRKSAVFVQSICRGELARRSYYHMKREAAATRIQTHMRGKLARKWYTKIRISAIVLQTGFRAMAACDKLRYRKQTSASSSIQALEISVENGSPSVEESKNSFQEESSSPFQDNESIEAIRDSSSLRDPEKIEALTAEIKNLKVMLQAEKQKADEYERKYTEAQASSEELRKKLAETEKRVYQLQDSLNRMISSMSSQVAELKTILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPAPVSNTEAFPSSKPKTFQLVVQDITAVDGSGSESEKEGSFDDFF* 1042
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01266 1041 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Rops6g01266 1041 Pfam Myosin head (motor domain) 65 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 CDD MYSc_Myo11 76 720 IPR036018 -
Rops6g01266 1041 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Rops6g01266 1041 ProSiteProfiles IQ motif profile. 783 807 IPR000048 GO:0005515
Rops6g01266 1041 SMART iq_5 757 779 IPR000048 GO:0005515
Rops6g01266 1041 SMART iq_5 734 756 IPR000048 GO:0005515
Rops6g01266 1041 SMART iq_5 782 804 IPR000048 GO:0005515
Rops6g01266 1041 Coils Coil 888 943 - -
Rops6g01266 1041 SUPERFAMILY Tropomyosin 861 958 - -
Rops6g01266 1041 Gene3D - 252 310 - -
Rops6g01266 1041 Gene3D Kinesin motor domain 65 662 IPR036961 -
Rops6g01266 1041 PANTHER MYOSIN 54 968 - -
Rops6g01266 1041 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 Gene3D - 666 733 - -
Rops6g01266 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 785 IPR027417 -
Rops6g01266 1041 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 MobiDBLite consensus disorder prediction 981 1007 - -
Rops6g01266 1041 FunFam Myosin heavy chain 252 307 - -
Rops6g01266 1041 Gene3D - 439 623 - -
Rops6g01266 1041 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Rops6g01266 1041 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Rops6g01266 1041 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops6g01266 1041 MobiDBLite consensus disorder prediction 845 875 - -
Rops6g01266 1041 Gene3D - 785 835 - -
Rops6g01266 1041 Gene3D - 735 784 - -
Rops6g01266 1041 MobiDBLite consensus disorder prediction 845 879 - -
Rops6g01266 1041 FunFam Myosin 2 312 426 - -
Rops6g01266 1041 FunFam Class V myosin 439 578 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops6g01266 Rops-Chr6 27762913 27782310 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01266 1 933 Myosins gene family AT1G08730 68.081 0.0 1354
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01266 K10357 - gmx:100803485 1758.42
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01266 6 27762913 27782310 Rops6g01266 6 27762913 27782310 ECH