Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops6g01266 | ATGGGCATCCCAGAAAACATTGTTGTCGGTTCTCATGTTTGGCTTGGAGATCCAGAGTTAGTTTGGATTGATGGACTAGTACTGAATATTAATGGAGAAGAAGCTGAAATTCAAGCTAGCAATGGGAAGAAGGTGGTTTTCCATTTGTCAAAATTATATCCCAAGGATACAGACGCTCCTACTGATGGAATTGATGACATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGCATAATTTGCAAACTAGATACAAGATCAATGAAATATATACTTATACTGGAAATATTCTTATTGCAATCAATCCCTTCCAAAGTCTTCCTCACCTATATGATGCTAATACGATGAAAAAATACAAGGGAGCAACAGTTGGAGATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCAATGATTACTGAGGAGAAAAGCAACTCTATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACCACCAAAATGCTTATGTGTTACCTGGCATATTTGGGTGGTCACACTGCTCCTGAAGGACGGACTGTTGAACAACAAGTTCTAGAATCAAACCCTGTTCTTGAAGCATTTGGTAACGCAAAAACTGTTAGAAATGACAATTCCAGCCGTTTCGGAAAATTTGTTGAGATTCAATTTGATAAGTATGGACGAATATCCGGTGCAGCCATCAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATCTCAGATCCTGAGCGTAACTATCACTGTTTTTACCTTCTGTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGCTGGGGGATCCCAGATCATTTCACTACCTTAATCAATCCAATTGCTACGAATTAGCTGGCGTTAATGCTGCTCAAGAGTATCTTAGCACCAAGAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAAGATGCAATTTTCAGAGTTGTAGCTGCTATTCTTCATCTTGGAAATATTAAGTTTGCAAAATCAGAAGAAAATGATTCATCAGTTCTAGAAGATGAAAAATCCAAGTTCCACCTCCAAACAGCTGCAGAACTTCTCATGTGTGATCCTGATGCTTTGGAAGCTGCACTTTGTAAGCGCATGATGATTACACCGGAAGAAATCATCAAAAAAAGTCTTGATCCTCTTGGTGCAACAGTTAGCAGGGATGGTTTAGCCAAGACATTATATTCTCGTTTATTTGAATGGTTAGTCTATAAAATCAATACATCCATTGGGCAGGATCCTAGCTCAAAATGTCTTATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAACTAATAGTTTTGAGCAGTTTTGTATTAATTTCACAAATGAAAAGCTGCAACAACACTTCAACCAGCATGTATTTAAGATGGAGCAGGAGGCATACACAAAAGAAGGGATTGACTGGAGCTACTTAGAATTTGTAGATAATCAAGATGTACTGGATCTCATTGAAAAGAAACCAGGTGGAATCATTGCTTTGCTTGATGAAGCTTGCATGTTTCCCAAGGCAACTCATGAAACCTTTTCGCAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATTAAGCCAAAATTGTCACGCTCTGACTTCACTATTGTTCATTATGCAGGGGAGGTTCAGTATCAGTCTGATCTGTTTATAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTGGTTCCAAATGTTCATTTGTATCAGGCCTTTTTCCTCCACTTTCTGAGGAGGCTGCCAAATCTGCTAAGTTTTCTTCTATCGGTTCTCGTTTTAAGCTACAATTACAACAATTGATGGATACGCTCAATCTGACAGTGCCCCATTATATTAGATGTGTGAAGCCAAATAATCTATTAAAACCTAACATATTTGAGAATATGAACGTCATCCAACAATTACGCTCTGGTGGTGTTCTTGAAGCAGTAAGAATTAAATGTGCTGGATTCCCCACTCACAGGACCTTTCATGAATTTTTAACTCGATTAGGCATTCTTGCTCCAGAGGTTCTTCGAGGGAACTACGAAGAAAAGGATTCATGTAAAATTTTTTTGGAGAAGACCGGGCTGTCAGGTTATCAGATAGGGGAAACACAAATATTCCTAAGAGCTGGTCAGATGGCTGAATTGGATGCTCAGAGAGCATGCCTGCTTAGCAATTCAGCAACAGTTATCCAAAAGCAGATTAAAACTCATTTTAGTCAAAAAACATATATTGCATTGCGAAAGTCTGCTGTCTTTGTGCAATCCATTTGCAGAGGAGAATTGGCTCGGAGATCATATTATCACATGAAGAGGGAAGCAGCTGCAACCAGAATTCAAACGCACATGCGTGGAAAATTAGCCAGAAAATGGTACACCAAAATAAGGATTTCCGCCATTGTCTTGCAGACAGGTTTTCGGGCAATGGCTGCTTGTGATAAATTGAGATATAGAAAGCAAACTAGTGCATCAAGTAGTATTCAGGCTTTGGAGATTTCGGTGGAAAATGGAAGTCCTTCCGTGGAAGAATCTAAAAATTCTTTTCAAGAAGAATCCTCAAGTCCTTTCCAAGATAATGAAAGCATTGAAGCTATCAGGGATTCCTCTAGTCTCAGAGATCCAGAAAAGATTGAGGCTCTTACTGCAGAAATAAAAAACTTGAAGGTTATGTTGCAGGCAGAAAAACAAAAAGCTGATGAATATGAAAGGAAATATACAGAAGCTCAAGCTTCTAGTGAAGAGTTGCGCAAAAAGTTAGCGGAAACTGAAAAAAGAGTATATCAGCTTCAGGACTCATTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTAAGTACTTCCTCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGAGTTGATGTTGCTTCCAGTAACTCTGATACTTCATCCACAGACTCTGATTTCACATTTCCAGCACCTGTTTCAAATACAGAAGCCTTTCCTTCCTCGAAGCCAAAAACTTTTCAACTAGTAGTTCAGGATATCACTGCAGTGGATGGATCAGGATCTGAAAGTGAAAAGGAAGGTTCATTTGATGATTTCTTCTAG | 3126 | 0.3925 | MGIPENIVVGSHVWLGDPELVWIDGLVLNINGEEAEIQASNGKKVVFHLSKLYPKDTDAPTDGIDDMTKLAYLHEPGVLHNLQTRYKINEIYTYTGNILIAINPFQSLPHLYDANTMKKYKGATVGDLSPHVFAIAEAAYRAMITEEKSNSILVSGESGAGKTETTKMLMCYLAYLGGHTAPEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIKFAKSEENDSSVLEDEKSKFHLQTAAELLMCDPDALEAALCKRMMITPEEIIKKSLDPLGATVSRDGLAKTLYSRLFEWLVYKINTSIGQDPSSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEAYTKEGIDWSYLEFVDNQDVLDLIEKKPGGIIALLDEACMFPKATHETFSQKLYQTFKDHKRFIKPKLSRSDFTIVHYAGEVQYQSDLFIDKNKDYVVPEHQDMLSGSKCSFVSGLFPPLSEEAAKSAKFSSIGSRFKLQLQQLMDTLNLTVPHYIRCVKPNNLLKPNIFENMNVIQQLRSGGVLEAVRIKCAGFPTHRTFHEFLTRLGILAPEVLRGNYEEKDSCKIFLEKTGLSGYQIGETQIFLRAGQMAELDAQRACLLSNSATVIQKQIKTHFSQKTYIALRKSAVFVQSICRGELARRSYYHMKREAAATRIQTHMRGKLARKWYTKIRISAIVLQTGFRAMAACDKLRYRKQTSASSSIQALEISVENGSPSVEESKNSFQEESSSPFQDNESIEAIRDSSSLRDPEKIEALTAEIKNLKVMLQAEKQKADEYERKYTEAQASSEELRKKLAETEKRVYQLQDSLNRMISSMSSQVAELKTILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPAPVSNTEAFPSSKPKTFQLVVQDITAVDGSGSESEKEGSFDDFF* | 1042 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops6g01266 | 1041 | ProSiteProfiles | IQ motif profile. | 758 | 787 | IPR000048 | GO:0005515 | |
Rops6g01266 | 1041 | Pfam | Myosin head (motor domain) | 65 | 720 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | CDD | MYSc_Myo11 | 76 | 720 | IPR036018 | - | |
Rops6g01266 | 1041 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 312 | 601 | - | - | |
Rops6g01266 | 1041 | ProSiteProfiles | IQ motif profile. | 783 | 807 | IPR000048 | GO:0005515 | |
Rops6g01266 | 1041 | SMART | iq_5 | 757 | 779 | IPR000048 | GO:0005515 | |
Rops6g01266 | 1041 | SMART | iq_5 | 734 | 756 | IPR000048 | GO:0005515 | |
Rops6g01266 | 1041 | SMART | iq_5 | 782 | 804 | IPR000048 | GO:0005515 | |
Rops6g01266 | 1041 | Coils | Coil | 888 | 943 | - | - | |
Rops6g01266 | 1041 | SUPERFAMILY | Tropomyosin | 861 | 958 | - | - | |
Rops6g01266 | 1041 | Gene3D | - | 252 | 310 | - | - | |
Rops6g01266 | 1041 | Gene3D | Kinesin motor domain | 65 | 662 | IPR036961 | - | |
Rops6g01266 | 1041 | PANTHER | MYOSIN | 54 | 968 | - | - | |
Rops6g01266 | 1041 | ProSiteProfiles | Myosin motor domain profile. | 62 | 732 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | Gene3D | - | 666 | 733 | - | - | |
Rops6g01266 | 1041 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 38 | 785 | IPR027417 | - | |
Rops6g01266 | 1041 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | MobiDBLite | consensus disorder prediction | 981 | 1007 | - | - | |
Rops6g01266 | 1041 | FunFam | Myosin heavy chain | 252 | 307 | - | - | |
Rops6g01266 | 1041 | Gene3D | - | 439 | 623 | - | - | |
Rops6g01266 | 1041 | SMART | MYSc_2a | 56 | 733 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | Pfam | IQ calmodulin-binding motif | 785 | 803 | IPR000048 | GO:0005515 | |
Rops6g01266 | 1041 | Pfam | IQ calmodulin-binding motif | 759 | 778 | IPR000048 | GO:0005515 | |
Rops6g01266 | 1041 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | PRINTS | Myosin heavy chain signature | 482 | 510 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | PRINTS | Myosin heavy chain signature | 196 | 223 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | PRINTS | Myosin heavy chain signature | 429 | 457 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
Rops6g01266 | 1041 | MobiDBLite | consensus disorder prediction | 845 | 875 | - | - | |
Rops6g01266 | 1041 | Gene3D | - | 785 | 835 | - | - | |
Rops6g01266 | 1041 | Gene3D | - | 735 | 784 | - | - | |
Rops6g01266 | 1041 | MobiDBLite | consensus disorder prediction | 845 | 879 | - | - | |
Rops6g01266 | 1041 | FunFam | Myosin 2 | 312 | 426 | - | - | |
Rops6g01266 | 1041 | FunFam | Class V myosin | 439 | 578 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops6g01266 | Rops-Chr6 | 27762913 | 27782310 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops6g01266 | 1 | 933 | Myosins gene family | AT1G08730 | 68.081 | 0.0 | 1354 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops6g01266 | K10357 | - | gmx:100803485 | 1758.42 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops6g01266 | 6 | 27762913 | 27782310 | Rops6g01266 | 6 | 27762913 | 27782310 | ECH |