Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01265 ATGGAAGGAAACTATTTGAACAGAAACACTCATAGAGAGGACAGCTTGGGGTTTGAGGAGCATACATGGGGAACTTCATGGCCAGCTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTTAGGTCTGCTCAAGCTTTGGGTGGACATATGAATGTTCATAGGAGGGATAGGGCAAGATTGAGATCATCCTTATCTTCATGGGTTTCTGAGTGCCCTAAACCTAACCCTACAACAACTAAGCCTAATAACCCAACTCTTCTTTCACCTTCTTCACCAACCCCTTTATCTGATGAGGTTTTGAATTATGCACTTCCTTCTCCACTTTATAGTCCTTGTCTCTCTTTATCTTCTTCACCCTCCCCAGCTTCTACAAGTGAAGATAAGAAACCAAGACTCACCACATCTTCTCATCACTTTCCTCTTTTGAGTCCTGAAAGAAGGGAAATTATGATGAGTGAGGACACAAGGAGTAGTGCTGCTGAGGAAAACATGGAGTTCAAGAATAATGGGCAAAACATTAAGCTGGAATTAGGAATAGGGTTGCTTAAACATGAAGAGGAGAAGCTAGATTTGGAACTTCGACTCGGGCATTTCTAG 600 0.4217 MEGNYLNRNTHREDSLGFEEHTWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLSSWVSECPKPNPTTTKPNNPTLLSPSSPTPLSDEVLNYALPSPLYSPCLSLSSSPSPASTSEDKKPRLTTSSHHFPLLSPERREIMMSEDTRSSAAEENMEFKNNGQNIKLELGIGLLKHEEEKLDLELRLGHF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01265 199 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Rops6g01265 199 MobiDBLite consensus disorder prediction 116 130 - -
Rops6g01265 199 MobiDBLite consensus disorder prediction 67 99 - -
Rops6g01265 199 MobiDBLite consensus disorder prediction 67 98 - -
Rops6g01265 199 MobiDBLite consensus disorder prediction 116 142 - -
Rops6g01265 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Rops6g01265 199 PANTHER OS07G0101800 PROTEIN 12 198 - -
Rops6g01265 199 Gene3D Classic Zinc Finger 18 78 - -
Rops6g01265 199 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Rops6g01265 199 Pfam C2H2-type zinc finger 32 56 - -
Rops6g01265 199 SMART c2h2final6 32 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01265 Rops-Chr6 27755940 27756539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01265 3 197 C2H2 Transcription Factor Family AT3G23130 38.916 2.78e-25 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01265 zf-C2H2_6 5.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01265 - - gmx:102662947 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01265 6 27755940 27756539 Rops6g01265 6 27755940 27756539 ECH
Rops8g03078 8 68437443 68438051 Rops6g01265 6 27755940 27756539 PCT