Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01264 ATGGATTTCAACTACCAAGAAGACTCCAAGAGCTCCAGTGATGAAATTGATAGATCACCTGAGCAAAATGATGATATGGGAACTGGTAGATCCTATGAGTGTGTCTTTTGCAAGAGAGGCTTCACTACTGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAAGATAGAGCCAACAAGACCAAACCCAATTTCCCTCCTTCAAGTTCAAGCAAGGTTGATGAAAACTATGCAGATCTTGGGTTCTACTCACCAATTCCAACCCACCTTGCAAGAGGGAATAACTACTATTCCACTGCTCCTGATCCTGAGGTAGATACTATTAATTACCATCAAATATATTTCCCTTCACATGCTTGTGGTACCAAGCCTTCACATGTTCAGTATAGTGAGGTTTTGTGTGTAGAAAACCAAAGGGATCATCACCTCTTGTTTGGACAAGATTGGAGGCAAAGGGGTTTGAGCTTGTACACTAATCCATTATGTGTACATGAAAATAAAGACAAGATAGAACACAACAGTGAAGAGGATGACCTTGATTTGGAGCTTAGACTTGGTCATCATCCATAG 573 0.4101 MDFNYQEDSKSSSDEIDRSPEQNDDMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDRANKTKPNFPPSSSSKVDENYADLGFYSPIPTHLARGNNYYSTAPDPEVDTINYHQIYFPSHACGTKPSHVQYSEVLCVENQRDHHLLFGQDWRQRGLSLYTNPLCVHENKDKIEHNSEEDDLDLELRLGHHP* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01264 190 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Rops6g01264 190 Gene3D Classic Zinc Finger 8 81 - -
Rops6g01264 190 SUPERFAMILY beta-beta-alpha zinc fingers 30 59 IPR036236 -
Rops6g01264 190 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Rops6g01264 190 Pfam C2H2-type zinc finger 32 56 - -
Rops6g01264 190 MobiDBLite consensus disorder prediction 1 27 - -
Rops6g01264 190 PANTHER OS07G0101800 PROTEIN 10 189 - -
Rops6g01264 190 MobiDBLite consensus disorder prediction 7 24 - -
Rops6g01264 190 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01264 Rops-Chr6 27741379 27742241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01264 32 93 C2H2 Transcription Factor Family AT5G43540 50.000 3.72e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g01264 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01264 - - gmx:102670484 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01264 6 27741379 27742241 Rops6g01264 6 27741379 27742241 ECH