LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g01261	ATGGCTTCTTCAAGTGGAAATGGAACTGGCTCTGGATCTCCTTGTGGGGCATGCAAGTTCCTAAGAAGAAAGTGTGCAGCTGATTGCATCTTTGCACCTTATTTTTGCTCAGAACAAGGGCCTGCTAGATTTGCAGCCATCCATAAGGTGTTTGGTGCTAGCAATGTTTCCAAGTTGCTCTTGCATTTACCAGCTCATGATCGTGGTGAGGCTGTGGTCACAATTGCTTATGAAGCTCAAGCTCGTATCAGAGATCCTGTTTATGGTTGTGTCTCTCATATTTTTGCCTTACAACAACAGGTAGCATGCTTGCAGGCACAACTGACGCAAGTGAAGGCACAGCTAGCTCAGAACCTGAGGGAGTCGAGGAACTTGGAGAATCAATGGTCAGGGAATGTTGCTGGACAACCATCAAATGCATTTTGTCCCACTTACATATCTCCTCAGAGCTCACTTGAGTCAATTGATTATAGCAGCATCAATGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGAGATGTCATTATTCCATGCTTGTTCTAAGAAAAGATCATGTAACAATGACTTGGGTGAACTGCAAGAACTGGCACTCAGGATGATGAGGAACTATAACTAA	621	0.4396	MASSSGNGTGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHLPAHDRGEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLTQVKAQLAQNLRESRNLENQWSGNVAGQPSNAFCPTYISPQSSLESIDYSSINDGMSMQDIQSREEMSLFHACSKKRSCNNDLGELQELALRMMRNYN*	207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g01261	206	Coils	Coil	94	128	-	-
	Rops6g01261	206	ProSiteProfiles	LOB domain profile.	13	115	IPR004883	-
	Rops6g01261	206	PANTHER	LOB DOMAIN CONTAINING PROTEIN	10	167	-	-
	Rops6g01261	206	Pfam	Lateral organ boundaries (LOB) domain	14	112	IPR004883	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g01261	Rops-Chr6	27716626	27717852	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g01261	3	204	AS2 family	AT2G42430	55.738	3.62e-78	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Rops6g01261		LOB	1.3e-37	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g01261	K13944		-	gmx:100801508	319.701

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops8g03083	8	68543889	68545253	Rops6g01261	6	27716626	27717852	PCT