Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01260 ATGACTGGTTCTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAATGTGTGAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAGCAGGGTGCTACCCATTTTGCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTTCCTGTAAGTGATCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGATGTGTTTCTCACATTTTTTCCCTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGCTTATCTCAAAGAACAAGCAGCTCAGACTGGTCTCAATGCCTCTACCAATGAAAACCCTAATGAAAAATCTACTGCTTTCTCCCAAGATCTTCAGACTTGGTTTCAGGTGGAAAATCCCAACCTGGGGCCACAATTTCTACCTAATTTGTCTAATAATTCCTCAGCAACTCAATATTATGGGAACAATACTCTCATGGATCTAAACCCTATTGGGAATTATGAAAATTCAAGAGTCATGGATGAAAGCAGCTCATTTTCTAGCTTTGATGAGAGTTCTAACTCCATGTCCTATGACATGCAAACACACAGGAGGACATGGCCCTTTGATGAAGTGGAGGACCTACATTCAGTGGCTTTTGGCTACAGCTGA 681 0.4258 MTGSGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFSLQQQVVNLQAQLAYLKEQAAQTGLNASTNENPNEKSTAFSQDLQTWFQVENPNLGPQFLPNLSNNSSATQYYGNNTLMDLNPIGNYENSRVMDESSSFSSFDESSNSMSYDMQTHRRTWPFDEVEDLHSVAFGYS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01260 226 Coils Coil 89 109 - -
Rops6g01260 226 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Rops6g01260 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 199 - -
Rops6g01260 226 Pfam Lateral organ boundaries (LOB) domain 9 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01260 Rops-Chr6 27702446 27703246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01260 9 225 AS2 family AT3G58190 53.571 2.25e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops6g01260 LOB 4.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01260 K13945 - gmx:100776678 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01260 6 27702446 27703246 Rops6g01260 6 27702446 27703246 ECH
Rops8g03084 8 68566546 68567309 Rops6g01260 6 27702446 27703246 PCT