LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g01252	ATGAGAAAATCCTCAGAGACATCATCATCGTCTCCATCATGCAGAAGCAGATCCGAGAAGAAGCACAATCTTCGAAGCTCAAAACCCCAATCAGATCAACTGAGCTTAATAACCCCAGAGAAGCCACTGGAGCGTGTGCGAAACCGCGGCGTAGCGCTCTCAGTCGCGGAGGTCCGGAAGGTCGCTGAGAGAATGCAGGATCGGAAGCAAAGCCATGAAACGACGTCGTCACGGGTCAAAACAGTTAGGAGGCAGATCGTATTGCCTTCACCAAGTAAACGCAAGACTGATGAACCCTTCGAGCTTCCTGAGAAGTATGAAATTTTAGGTGATTTCTTCAACAGTTTGGTTAGTTCGATTCGATTGTTGAGTTTGAAAGGGTCTACACCGTCCTTCACGAAGATCAGCCCCATAATTGAAACTTTAACTAATAGGCGTTTTACACGTACTCATTTGGCCCAGTTGAAATTTATCTTACCTGAGGCAATTGTTATCAAGAAGTTTAATGTGTTTGATGAACGGACAAGTTGTATGAAGCCAGATCTTCATGTTTCTATAAACCCTGATGCAGTAAAGTCTGATGAAAAGTTGCTCCCTGGATGTGGGACTGAGCCACTGAAGAAGTTGTTTCGCTCACGGCTCAGAGATTTTTGCAAATCTCATCCAGAGGGTGATGAAATTCCAGAGGAAATACTGCCTGAGCCATTCAATCACCCAAAGCAAGACTGTCTTTTGGCCATGTTGAAAACTCCCTCCTCATCATTCTCTACAGCAACATTGCAGACTAGTGACATTGCAGATAATACAGACCCTGCTAACATAGAAAAAATTTTGTCAGTAACTGTCAAGAAATCAGTTGAAGCACTTAACCAGCAACCAGCAGTGGCCTCTCATATGTCTCAAGCTTTTAGAAGGCGGTTTTCTCAGAAATCTAAGGAAAATGGAGCAGATAATGTACGGCAAAGTTTACCATCAGATTCATCCCAACCCATTGCTTTTACAGTTTCAGAGTCAAGCCTGAAGAAAACTTCCCCCTCTGAGGGTGCTAAATCTCAACCTAACACATTCCCAGCTGAGTTGGCTTCAGAAGCAGCCAGTAGTGAAATATGTCCGACAAGCAAAACCATTGAATTTACAGAAAACAAAGATGGATCTCTCAAAAGCATGGATACCATGTCAACTCCAGCTAAACTCGTGTCTACTCCATTGAGGCTGATGACTGCCACACCTGCATTGCCTTCTCCTAAAAGGCATTACATGAGCCCTGATGACAACTCTACCAGTTCAGTGAACAAGTTGGTTAGGCGTCCACCACGATCAAGGTCATTGAAATTTGACTCTCCAGTGAAAAATGAAGATGATGCTGGTGGCTTGTCAATCGATGATGATAATTTGGATATTCTCCCAGAGAGTCTTCTCCAATCGATTAGGGAAAAAGAAAGAATTGCAATGCAGGAAAGAGATCCAGCTATCTCACAAGCAAAGAGACGGAAAAAAGTTATTGCCAGCCTCCCTAAGCTCTTTAACATGATTCACCTGTTGTTTCATTCATTAAACCGTTCTGTTGTCACAAAAGCAGAGCTTATAAGCAAGATAATCTCCAGCCATCGTGATATTGTTGACAGAAGCGAAGTTGAAGAACAGTTGCATTTGTTGCTAGAACTAGTACCGGAATGGATTTCTGAGAAGTTGGCTTCTAGTGGGGATTACCTATTCTGCGTGAATAAAATGTTGAACCCTGATACCATACGAGCATCACTTGAAGAAGCAAAATGA	1776	0.4302	MRKSSETSSSSPSCRSRSEKKHNLRSSKPQSDQLSLITPEKPLERVRNRGVALSVAEVRKVAERMQDRKQSHETTSSRVKTVRRQIVLPSPSKRKTDEPFELPEKYEILGDFFNSLVSSIRLLSLKGSTPSFTKISPIIETLTNRRFTRTHLAQLKFILPEAIVIKKFNVFDERTSCMKPDLHVSINPDAVKSDEKLLPGCGTEPLKKLFRSRLRDFCKSHPEGDEIPEEILPEPFNHPKQDCLLAMLKTPSSSFSTATLQTSDIADNTDPANIEKILSVTVKKSVEALNQQPAVASHMSQAFRRRFSQKSKENGADNVRQSLPSDSSQPIAFTVSESSLKKTSPSEGAKSQPNTFPAELASEAASSEICPTSKTIEFTENKDGSLKSMDTMSTPAKLVSTPLRLMTATPALPSPKRHYMSPDDNSTSSVNKLVRRPPRSRSLKFDSPVKNEDDAGGLSIDDDNLDILPESLLQSIREKERIAMQERDPAISQAKRRKKVIASLPKLFNMIHLLFHSLNRSVVTKAELISKIISSHRDIVDRSEVEEQLHLLLELVPEWISEKLASSGDYLFCVNKMLNPDTIRASLEEAK*	592

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g01252	591	CDD	Cdt1_c	462	588	IPR032054	-
	Rops6g01252	591	SMART	CDT1_2	102	234	IPR014939	-
	Rops6g01252	591	FunFam	CDT1-like protein a chloroplastic	461	591	-	-
	Rops6g01252	591	SUPERFAMILY	"Winged helix" DNA-binding domain	98	236	IPR036390	-
	Rops6g01252	591	Pfam	DNA replication factor Cdt1 C-terminal domain	471	563	IPR032054	-
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	307	367	-	-
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	439	457	-	-
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	63	79	-	-
	Rops6g01252	591	Pfam	DNA replication factor CDT1 like	102	221	IPR014939	-
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	63	84	-	-
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	409	460	-	-
	Rops6g01252	591	PANTHER	DNA REPLICATION FACTOR CDT1	7	591	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	1	43	-	-
	Rops6g01252	591	Gene3D	-	461	591	IPR038090	-
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	420	435	-	-
	Rops6g01252	591	CDD	Cdt1_m	89	240	IPR014939	-
	Rops6g01252	591	MobiDBLite	consensus disorder prediction	314	367	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g01252	392	590	Core DNA Replication Machinery Family	AT3G54710	42.678	1.61e-38	146

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g01252	K10727		-	gmx:100778818	608.986

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops6g01252	6	27622271	27625824	Rops6g01252	6	27622271	27625824	ECH