Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01248 ATGGCACTGAACAACAACCAGTCCTACAAGCTTGGATATCAAGCTTTCCCACCCATCATAACCCAGGCTGGTATATTCTATCACCCTCCACAACCTGCTTCAGACTATGCTTTTCCCTTATTTGCCATTGTTGTGCTTAGCATCTTGGCCACTGTTTTGTTGCTCTTCAGCTACTTCACTTTTATGACCAAATGCTGCTCAAACTGGCATCAAGTTAACCCTTTGAGATGGATTTCCATCCTGAGAGCTCGACAGCATGAGGATCCCTTCATAGCACTGTCTCCTGCCATGTGGAACCGTGGCCTTGATGAATCTGTCATCAGAGAAATCCCAACATTTCAGTTCATAAAAGGAGAAGGTAAGGATCAGAGTGTGTATGGCTGTGTGGTTTGTTTGACCGAGTTTCAAGAACAGGATGTGCTAAAAGTTCTACCCAATTGCAACCATGCCTTTCACTTGGATTGCATTGACATTTGGCTTCAGACAAATGCCAATTGCCCTCTTTGTAGATCAAGCATTTCAGGCAACACTCACTGTCCATTTGACCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAATTACTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTTGGGGGAGAACATGGGGGATTACTGCCACAGGTGCAACAAGAAAGAAATGACTCAAGGGGAAGCATGGCACAGAGTAGAAATCACTCTACCATGAAGGTGGGGCAGCAGAAGCTTGGAAATTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAGTGCATTGATATCAGAAAGAAAGATGATCAGTTTTCTATTCAGCCCATTAGAAGATCTTTCTCAATGGATTCTGCAAATGATAGACAAGTTTACTTGGATGTTCAAGCCATTATACAACAAAATAGGCATCAAAATGAGGCTAGTGCCAGCGAGGATTGTAATAGCAGAAGTCGAAGAGCGTTCTTTCCATTTTGTTATGGAAAGGGATCCAAAAATGCAGTCCTTCCTTTGGAGAATGATGTTTAA 1044 0.4272 MALNNNQSYKLGYQAFPPIITQAGIFYHPPQPASDYAFPLFAIVVLSILATVLLLFSYFTFMTKCCSNWHQVNPLRWISILRARQHEDPFIALSPAMWNRGLDESVIREIPTFQFIKGEGKDQSVYGCVVCLTEFQEQDVLKVLPNCNHAFHLDCIDIWLQTNANCPLCRSSISGNTHCPFDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEHGGLLPQVQQERNDSRGSMAQSRNHSTMKVGQQKLGNLKPRKCHHVSIMGDECIDIRKKDDQFSIQPIRRSFSMDSANDRQVYLDVQAIIQQNRHQNEASASEDCNSRSRRAFFPFCYGKGSKNAVLPLENDV* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01248 347 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Rops6g01248 347 CDD RING-H2_EL5-like 128 170 - -
Rops6g01248 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 175 IPR013083 -
Rops6g01248 347 SMART ring_2 128 169 IPR001841 -
Rops6g01248 347 PANTHER RING-H2 FINGER PROTEIN ATL16 24 344 IPR044600 GO:0016567|GO:0016740
Rops6g01248 347 SUPERFAMILY RING/U-box 127 175 - -
Rops6g01248 347 Pfam Ring finger domain 128 170 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01248 Rops-Chr6 27599561 27600604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01248 29 310 C3H Transcription Factor Family AT1G04360 45.455 7.87e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01248 K19041 - gmx:100809883 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01248 6 27599561 27600604 Rops6g01248 6 27599561 27600604 ECH
Rops6g01248 6 27599561 27600604 Rops8g03090 8 68643672 68644667 PCT