Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01244 ATGAGTTCCCCTTTCTTTCTGAACCCAGATTGGGAAATGCAGCAGGAGCCTTCAGAAATTTTGTTCGAATCATTTTCAAGCAATGGTGTTCATGACCCTATTCATGATTCTCTTTCCTTTGATATGGCCGACTTCTCCATGGACTCACAGGCACCAATCAAAGGAAACAACAACAAACCAAAGCCATTGTTGAAGAAGTCTGAAGCTGAAGAAGTGAAGACTAATAAGGAAAGGTCTTATGTGGGTGTCAGGAAAAGGCCTTGGGGAAAGTTTGCAGCAGAGATCAGAGACACAACAAGGAGTGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGTAGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCGATAATGCTGTGCTCAATTTTCCTGTCAAAAGGGTCCAAGAATCTTTGCAAGAGATCGAATATCATTGCCGCAAAGGGTGTTCGCCCGCACTTGCACTCAAGGAGAGACACTGCATCCAAAGAAAATTGTCGTCAAAAGCTAAAAAGAGTAAAGGGAAAGAAGAATCAGAGGCACCAAATGTGTTGGAGCTAGAGGACTTGGGAATTGAATATCTAGAGCAACTTCTAAGCATATCTGATCAAAGTACATGCCCTAGCTACTCCAAATAA 657 0.4323 MSSPFFLNPDWEMQQEPSEILFESFSSNGVHDPIHDSLSFDMADFSMDSQAPIKGNNNKPKPLLKKSEAEEVKTNKERSYVGVRKRPWGKFAAEIRDTTRSGTRVWLGTFDSVEAAALAYDQAAFSMRGDNAVLNFPVKRVQESLQEIEYHCRKGCSPALALKERHCIQRKLSSKAKKSKGKEESEAPNVLELEDLGIEYLEQLLSISDQSTCPSYSK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01244 218 Pfam AP2 domain 80 129 IPR001471 GO:0003700|GO:0006355
Rops6g01244 218 MobiDBLite consensus disorder prediction 49 70 - -
Rops6g01244 218 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Rops6g01244 218 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Rops6g01244 218 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Rops6g01244 218 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Rops6g01244 218 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Rops6g01244 218 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Rops6g01244 218 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Rops6g01244 218 FunFam Ethylene-responsive transcription factor 2 78 139 - -
Rops6g01244 218 PANTHER DNA-BINDING DOMAIN 57 208 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01244 Rops-Chr6 27542841 27543497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01244 77 211 AP2-EREBP Transcription Factor Family AT3G23240 59.124 1.61e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01244 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01244 K14516 - gmx:100812017 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01244 6 27542841 27543497 Rops6g01244 6 27542841 27543497 ECH
Rops8g04159 8 83744807 83745415 Rops6g01244 6 27542841 27543497 PCT