Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01242 ATGAGTTCCCCTTTCTTTCAGAACCCAGATTGGGAAATGCTGCAGGAGCCTTCAGAAATTTTGTTGGAATCATTTTCAAGCAATGGTGTTCATGACCCTATTCATGATTCTCTTTCCTTTGATATGGCTGACTTCTCCATGGACTCACAGGCACCAATCAAAGGAAACAACAACAAACCAAAGCCATTGTTGAAGAAGTCCGAAGCTGAAGAAGTGAAGACTAATAAGGAAAGGTCTTATGTAGGTGTCAGGAAAAGGCCTTGGGGAAAGTTTGCAGCAGAGATCAGAGACACAACAAGGAGTGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCAGAGGCTGCTGCTTTAGCTTATGACCAAGCTTCATTTTCCATGAGAGGCCATAACGCTGTGCTCAATTTTCCTGTCCAAAGAGTCCAAGAATCTTTGCAAGAGATCGAATATCATTGCCGCAAAGGGTGTTCGCCCGCACTTGCACTCAAGGAGAGACACTGCATCCAAAGAAAATTGTCGTCAAAAGCTAAAAAGAGTAAAGGGAAAGAAGAATCAGAGGCACCAAATGTGTTGGAGCTAGAGGACTTGGGAATTGAATATCTAGAGCAACTTCTAAGCATAGCTGATCAAAGTACACGCCCTAGCTACTCCAAATAA 657 0.4353 MSSPFFQNPDWEMLQEPSEILLESFSSNGVHDPIHDSLSFDMADFSMDSQAPIKGNNNKPKPLLKKSEAEEVKTNKERSYVGVRKRPWGKFAAEIRDTTRSGTRVWLGTFDSAEAAALAYDQASFSMRGHNAVLNFPVQRVQESLQEIEYHCRKGCSPALALKERHCIQRKLSSKAKKSKGKEESEAPNVLELEDLGIEYLEQLLSIADQSTRPSYSK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01242 218 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Rops6g01242 218 CDD AP2 80 139 IPR001471 GO:0003700|GO:0006355
Rops6g01242 218 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Rops6g01242 218 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Rops6g01242 218 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Rops6g01242 218 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Rops6g01242 218 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Rops6g01242 218 FunFam Ethylene-responsive transcription factor 2 78 139 - -
Rops6g01242 218 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Rops6g01242 218 PANTHER DNA-BINDING DOMAIN 57 209 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01242 Rops-Chr6 27481692 27482348 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01242 77 211 AP2-EREBP Transcription Factor Family AT3G23240 58.394 1.77e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01242 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01242 K14516 - gmx:100812017 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01242 6 27481692 27482348 Rops8g04159 8 83744807 83745415 ECH
Rops6g01242 6 27481692 27482348 Rops6g01452 6 30349772 30350664 ECH
Rops6g01242 6 27481692 27482348 Rops6g01242 6 27481692 27482348 ECH
Rops8g03092 8 68671948 68672670 Rops6g01242 6 27481692 27482348 PCT