Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01240 ATGGAAGAGGACTCAAAGGCCAAGGAGGAGTCACCAAAAGAAACCAGATACAGAGGAGTGCGGCGGCGTCCATGGGGAAAGTTCGCCGCCGAGATTCGGGACCCTGCTCGGCACGGTGCCCGTGTGTGGCTGGGGACATTCCTCACGGCGGAGGAGGCTGCAAGAGCTTATGACCGTGCAGCCTATGAGATGAGAGGTGCTTCAGCAGTTCTCAACTTTCCAAATGAGTACCCTTCTTGTGTCATCTCCTCTTCATCACTTTCACCTTCTTGCTCTGCATCCTCGTCTTCTTCTTCTTCAATGGTTAAGACTGAACATGATAAACAAGTTATTGAGTTCGAGTGTTTGGATGACAAATTGTTAGAGGACCTTCTTGATTCTTATGAGAATGAAAATACCAACGAGAAAGACTTGCCTAAGTAG 423 0.487 MEEDSKAKEESPKETRYRGVRRRPWGKFAAEIRDPARHGARVWLGTFLTAEEAARAYDRAAYEMRGASAVLNFPNEYPSCVISSSSLSPSCSASSSSSSSMVKTEHDKQVIEFECLDDKLLEDLLDSYENENTNEKDLPK* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01240 140 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Rops6g01240 140 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Rops6g01240 140 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Rops6g01240 140 PANTHER DNA-BINDING DOMAIN 6 126 IPR044808 GO:0003700|GO:0009873
Rops6g01240 140 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Rops6g01240 140 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Rops6g01240 140 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Rops6g01240 140 FunFam Ethylene-responsive transcription factor 2 15 75 - -
Rops6g01240 140 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Rops6g01240 140 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01240 Rops-Chr6 27453345 27453767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01240 13 129 AP2-EREBP Transcription Factor Family AT3G23230 63.934 1.49e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01240 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01240 - - gmx:100781487 181.8