Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01239 ATGAGTTTCCCTTTCTATCAGAACCTACATTGGGAAATACTGTTGGAGCCTTCAGAAATTTTGTCCGAATCATATTCGAGCAATGGTGTTCATGACCCTATTCATGATTTTCTTTCCTTTGATATGGTTGACTTCTTGACGGACTCACAGGCACCAATCGAAGGAAACAACAACGAACCAAAGCCATTGGTGAAGAAGTCTGAAGCTGAAGAAGTGCAGACTAGAAAGGAAAGGTCTTATGTGGGTGTCAGGAAAAGGCCTTGGGGAAAATTTGCAGCAGAGATCAGAGATTCAACAAGGAGTGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCAGCGGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTGCATGAGAGGCCATAATGCTGTACTCAATTTTCCGGTCGAAAGGATCCAAGAATCTTTGCAAGAGATCGAATATCATTGCTGCAAAGGGTGTTCGCCCGCACTTGCACTCAAGCAAAGGCACTGCATCCAAAGAAAATTGTCGTCAAAAGCTAAAAAGGGTAAAGCGAAACAGGTTTCAGAGGCATCAAGTGTGTTGGAGCTAGAGGACATGGGAGTTGAATATCTGGAGCAACTTCTAAGTATATCCGATCAAAGTACATGCCCTAGCTAA 648 0.4383 MSFPFYQNLHWEILLEPSEILSESYSSNGVHDPIHDFLSFDMVDFLTDSQAPIEGNNNEPKPLVKKSEAEEVQTRKERSYVGVRKRPWGKFAAEIRDSTRSGTRVWLGTFDSAAAAALAYDQAAFCMRGHNAVLNFPVERIQESLQEIEYHCCKGCSPALALKQRHCIQRKLSSKAKKGKAKQVSEASSVLELEDMGVEYLEQLLSISDQSTCPS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01239 215 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Rops6g01239 215 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Rops6g01239 215 MobiDBLite consensus disorder prediction 51 70 - -
Rops6g01239 215 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Rops6g01239 215 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Rops6g01239 215 PANTHER DNA-BINDING DOMAIN 60 206 IPR044808 GO:0003700|GO:0009873
Rops6g01239 215 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677
Rops6g01239 215 FunFam Ethylene-responsive transcription factor 2 78 139 - -
Rops6g01239 215 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Rops6g01239 215 PRINTS Ethylene responsive element binding protein signature 119 139 IPR001471 GO:0003700|GO:0006355
Rops6g01239 215 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01239 Rops-Chr6 27426784 27427431 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01239 72 211 AP2-EREBP Transcription Factor Family AT3G23240 57.343 5.38e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01239 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01239 K14516 - gmx:100812017 263.848