Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01238 ATGAGTTCCCCTTTCTTTCAGAACCCAGATAGGGAAATGCTGCAGGAGCCTTCAGAATTTTTCTTCGAATCATATTCGAGCAATGGTGTCCATGACCCTATTCATGATTGTCTTTCCTTCGATATGGTTGACTTCTCAACGAATTCACAGCCACAAACTGAAGGAAACAACAACGAACCAAAGCCGTTGTTGAAGAAGTCTGAAGCTGAAGAAGTGCAGACAAAAAAGGAAAGGTCTTATGTTGGTGTCAGGAAAAGGCCCTGGGGAAAATTTGCAGCAGAGATCAGAGATACAACAAGGAATGGCACAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAGGCTGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGCCATAACGCTGTGCTTAATTTTCCTGTCAAAAGGGTCCAAGAATCTTTGCAAGAGATCGAATATCATTGTCGCAAAGGGTGTTCGCCCGCACTTGCAATCAAGGAGAGACACTGCATCCAAAGAAATTTCTCGTCAAAAGCTAAAAAGAGTAAAGGGAAAGAAGAATCAGAGGGACCAAGTGTGTTGGAGCTAGAGGACTTGGGAATTGAATATCTAGAGCAACTTCTAAGCATATCTGATCAAAGAACACGGTCTAGCAACTCCAAATAA 657 0.4307 MSSPFFQNPDREMLQEPSEFFFESYSSNGVHDPIHDCLSFDMVDFSTNSQPQTEGNNNEPKPLLKKSEAEEVQTKKERSYVGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDSAEAAALAYDQAAFSMRGHNAVLNFPVKRVQESLQEIEYHCRKGCSPALAIKERHCIQRNFSSKAKKSKGKEESEGPSVLELEDLGIEYLEQLLSISDQRTRSSNSK* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01238 218 Gene3D AP2/ERF domain 79 139 IPR036955 GO:0003700|GO:0006355
Rops6g01238 218 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Rops6g01238 218 PRINTS Ethylene responsive element binding protein signature 103 119 IPR001471 GO:0003700|GO:0006355
Rops6g01238 218 SUPERFAMILY DNA-binding domain 80 138 IPR016177 GO:0003677
Rops6g01238 218 CDD AP2 80 138 IPR001471 GO:0003700|GO:0006355
Rops6g01238 218 MobiDBLite consensus disorder prediction 46 79 - -
Rops6g01238 218 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Rops6g01238 218 MobiDBLite consensus disorder prediction 61 79 - -
Rops6g01238 218 SMART rav1_2 79 143 IPR001471 GO:0003700|GO:0006355
Rops6g01238 218 PANTHER DNA-BINDING DOMAIN 53 210 IPR044808 GO:0003700|GO:0009873
Rops6g01238 218 FunFam Ethylene-responsive transcription factor 2 78 139 - -
Rops6g01238 218 ProSiteProfiles AP2/ERF domain profile. 79 137 IPR001471 GO:0003700|GO:0006355
Rops6g01238 218 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01238 Rops-Chr6 27384821 27385981 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01238 75 209 AP2-EREBP Transcription Factor Family AT3G23240 59.124 1.42e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g01238 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01238 K14516 - gmx:100527364 272.322