Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01235 ATGGAGAGAGAGAGATCAGTTTCAAATGGAAATGCAGAGGTTCGGTATAGAGGGATTCGTAGGAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCTACAAGGAAAGGGACTCGCATTTGGCTTGGAACCTTTGACACTGCTGAAGAGGCTGCACGGGCTTATGATTCTGCTGCTTTTCATTTCCGTGGTCACAGAGCTATTCTCAATTTCCCAAATGAGTACCAGGCTCCTAATCCAAACTCTTCTTTACCTATGCCCATGCTTCCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCTTACTCTGGTACTAATGAGGGTCTTATGAAAGCTGGTTTTTCTGGAGAAATGCAAGGTGATGACAGTTTTGAGTTTGAATACTTGGACAATAAGTTGCTGGAGGAACTCCTTCAGGCGCAAGATGACGGACAACTGCACAAGTGA 453 0.4503 MERERSVSNGNAEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEEAARAYDSAAFHFRGHRAILNFPNEYQAPNPNSSLPMPMLPSSSSSSSSSSSSYSGTNEGLMKAGFSGEMQGDDSFEFEYLDNKLLEELLQAQDDGQLHK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01235 150 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Rops6g01235 150 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Rops6g01235 150 FunFam Ethylene-responsive transcription factor 2 14 74 - -
Rops6g01235 150 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Rops6g01235 150 PANTHER DNA-BINDING DOMAIN 11 143 IPR044808 GO:0003700|GO:0009873
Rops6g01235 150 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Rops6g01235 150 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Rops6g01235 150 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Rops6g01235 150 MobiDBLite consensus disorder prediction 74 118 - -
Rops6g01235 150 MobiDBLite consensus disorder prediction 75 110 - -
Rops6g01235 150 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Rops6g01235 150 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01235 Rops-Chr6 27306022 27306808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01235 11 144 AP2-EREBP Transcription Factor Family AT3G23230 57.037 1.65e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01235 AP2 5.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01235 - - gmx:100779173 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03093 8 68675547 68675963 Rops6g01235 6 27306022 27306808 PCT