Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01234 ATGGATTTTGATTCTTCTTTCTTCCAATACCAAAACCTTAACTCTTCCTTTGCAAATTCCTCTGTTGTTTCTTCAGAATCTTTCTTCTGGGATGACTTTTTTTTCTTCAATGAAGCCAACAACACCCTTCCCTTCAACTTCGCTGACCATTCACAAATCAAGGAATCATCTTCAGATTCCAACACTTCAGGCTCTTTGGTGAGCACTGAATCACAAGAAGTCTCCTCCAATTTAACACATGCTCAAGTCCAAGAAAGACAAGCATCATCACCACCACCACTACCACCATCATCAGCACCAAAGGTGGAAAGTAACAAAGAGAAGAGACCCTACAGAGGAGTAAGGAGAAGACCATGGGGAAAATTTGCTGCAGAAATAAGGGACTCCACAAGAAATGGGGTTAGAGTGTGGATTGGCACGTTTGACACTGCTGAAGCAGCTGCTCTGGCTTATGATCAAGCAGCTTTGTCAACAAGAGGTTCCATGGCAGTGTTGAATTTCCCAGAAGAAGTGGTGAGAGAATCACTAAAAGACATGGTCAACAAGCCATGCGAAGATGGTTCCTCTCCTGTGTTGGCACTGAAGAGGAAGCACACCATGAGAAAAAAGTCCAAGACTAACCACAAAAAGGCCAAAAGGGATGACAGGGAATTAGCGATCCTTTCCCAAAATGTGCTGGTTTTGGAGGATTTGGGTACTGAATATCTTGAGCAACTTCTCAGCTTGACTTCTTCTGAAGTCATTTGCTAG 750 0.432 MDFDSSFFQYQNLNSSFANSSVVSSESFFWDDFFFFNEANNTLPFNFADHSQIKESSSDSNTSGSLVSTESQEVSSNLTHAQVQERQASSPPPLPPSSAPKVESNKEKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMVNKPCEDGSSPVLALKRKHTMRKKSKTNHKKAKRDDRELAILSQNVLVLEDLGTEYLEQLLSLTSSEVIC* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01234 249 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Rops6g01234 249 MobiDBLite consensus disorder prediction 54 88 - -
Rops6g01234 249 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Rops6g01234 249 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Rops6g01234 249 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Rops6g01234 249 FunFam Ethylene-responsive transcription factor 2 109 169 - -
Rops6g01234 249 MobiDBLite consensus disorder prediction 54 114 - -
Rops6g01234 249 SUPERFAMILY DNA-binding domain 111 169 IPR016177 GO:0003677
Rops6g01234 249 PANTHER DNA-BINDING DOMAIN 65 241 IPR044808 GO:0003700|GO:0009873
Rops6g01234 249 Gene3D AP2/ERF domain 110 170 IPR036955 GO:0003700|GO:0006355
Rops6g01234 249 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Rops6g01234 249 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01234 Rops-Chr6 27264137 27264886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01234 102 241 AP2-EREBP Transcription Factor Family AT3G23240 61.429 1.42e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g01234 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01234 K14516 - gmx:100784784 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01234 6 27264137 27264886 Rops6g01234 6 27264137 27264886 ECH
Rops8g03094 8 68687858 68688721 Rops6g01234 6 27264137 27264886 PCT