Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01223 ATGCCGTCGCTACTCTCGCCGGGGAAAATCCACCGGCTCGAAATGGAGAATTTCAAGTCCTACAAGGGTTTCCAGGTAATCGGTCCCTTCTACGACTTCACCGCCATCATTGGTCCCAACGGTGCCGGAAAATCGAACCTCATGGACGCCATAAGCTTCGTTCTCGGTGTCAGAACCGGTCAACTCCGCGGTGCGCAACTGAAAGACCTAATCTATGCTTTCGATGACAGAGAGAAGGAACAGAAAGGACGAAGAGCCTTCGTTCGTTTGGTTTATCAACTCGCCAACAATTCCGAGATCCAATTCACCAGAACTATCACCGCCGCCGGCGCTAGTGAGTACCGCATCGACGGCAACCTCGTAACCTGGGATGTCTACAATGCAAGGCTCAAATCCCTCGGAATTCTCGTCAAGGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAATCCATTGCATCCAAAAATCCCAAAGAGCTCACTGCACTTCTCGAGCAGATATCTGGCTCTGACGAGCTCAAAAGGGATTATGAGCAATTTGAGGAAGAAAAAGGTGCAGCTGAAGAAAAATCAGCTCTTGTTTATCAGAAGAAGAAGACGGTGGTTATGGAGAGAAAGCAGAAGAAAGAACAAAAGGAAGAGGCAGAGAAACATCTCCGCCTGCAAGAGCAATTGAAATCTATAAAGAAAGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAATGATATTGTTAAAACAACTGAAGACCTTGAAGACGAGAAAAAAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAAATTTGAAAATGAAGCTAGTAAAAAGAAAAAAGAGCAGGCCAAATATCTGAAAGAGATTGCGCTCCGTGAAAAGAGAATCACAGAGAAAAGCAACAAACTTGACAAGAGTCAACCTGAGCTTCTGAAGTTAAAGGAGGAAATGACTCGTATCAATTCAAAAATTAAAAAAGGGAAGAAGGAGCTTGATAAAAAAAGGGAAGAACGGAGGAGACATGCTGCTGATATAGCAGAGCTACAAAAGGGCATCCAGGATCTTACGGCGAAAATGGTAGACCTACAGGAAAAGGGTCGAGATGTTGGTGATCAGCTTAAGTTAGATAGCAATGACTTAGAAGAATATTTTAGGATCAAAGAAGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAGCTTCTAGATAGGCAGCAACATGCTGATAGTGAAGCTCAAAAGAATTTGGAAGAAAATCTTCAACAGTTAAGAAACAGGGAGTCTGAACTGAATTCACAGGAAGAACAGATGCAGGCAAGGCGTAAAAAAATTCTTGATAATTCTGCAAAAAATAAGGATGGCCTTGTAAACTTGAAGGAAGAATTGCGTACGATGCAGAACAAACATCATGATTCCAAGGAAAAATATAAAAATTTGAAGTTAAAAATCGACGAAGTAGAAAAACAACTACGTGAATTGAAGGCTGATCGATATGAAAATGAGAGAGATGCTAAACTGTCTCAGGCCGTGGAGACCCTGAAACGCCTGTTTCAAGGTGTCCATGGTCGCATGACTGATCTTTGTAGGCCTACGCGGAAGAAGTATAACCTAGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTCGTAGTTGAGGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTAAAAGATCAGAGGCTTCCTCCCCAGACATTTATTCCTCTGCAATCTGTTCGTGTGAAGCCAATAATGGAAAGATTGCGCACATTAGGGGCTTTTGAACTTAACGAGTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGAAATACTCTTGTTTGTGAAGACCTTGAGGAGGCCAAAATTTTAAGCTGGAGCGGCGAGAGGTTTAAAGTGGTAACTGTGGATGGAATTCTGCTGACAAAATCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGATAATTGAAGGACTTAATAAAAAGAAAGAGCAGTTTGAATCAGAGTTGGAAGAGCTAGGATCAATAAGAGATATGCAACTTAAAGAGTCGGAAGCATCTGGAAAAATTAGTGGACTTGAGAAGAAAATTCAATATGCTGATATTGAAAATCGAAGCATTGAAGACAAACTTTCAAATTTGAGCCGGGATAAAGAGAACATCAAAAAAGAAATTGAACGGATCAGTCCAGAACTCCAGAAGTTAAATGGTGCTATTGACAAGAGGAATGCAGAGTTACGAAAGCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAGACTTCAGCAAGTCAGTTGGGGTTGCAAACATCCGTGAATATGAAGAAGATCGACTCAAGGCTGCTCAAAATATAGCAGAGGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCACGAATTCAAGAACTGGAATCTTCTCTAAGTGCTTTAGAGAATGATTTAAAACGGGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCCGAGAAAGCTATGGAAGAGATCGATCAGTTTAAGGAAGAAGCTAAAGAATGGAAATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAAGATTGGAAGAAGAAGGCTTCTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACTCTAAGGAGGCACAGATTGAACAGTTGATGGTGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTAGAACAGATTATCCTTCCAACCATATCAGACCCTATGGATAGTGGTAGCTCAGCACCAGGTCCAGTTTTTGATTTTGATGAGCTCGGTAGGGTACTGAAAGATAGGAGACATTCTGACAGGAATAAAATTGAGGTAGAATTCAAGCAAAAAATGGATTCCTTGATACATGAGATTGAAAGAACAGCACCAAATTTGAAGGCGTTGGACCAATACGAGGCTCTGCTAGAAAAAGAGAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAGGAGAAGGAAAAAGCAGATAGATTCAATGCAGTTAAGCAGAGGAGGTATGAGTTGTTCATGGATGCTTTCAACCATATATCTGGTATTATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCTCTGGGTGGAACAGCATACCTTAACTTGGAAAATGAAGATGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAAAAGACTGTTGCTGCACTTGCATTACTATTCTCCATCCACAGTTATAAGCCTTCACCGTTTTTCATATTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTCGCAAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCGAGGGCGAGTCAGGATACTGATGGTGGAAGTGGTTTTCAGAGTATTGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAGGCGTTAGTTGGGGTTTACAGGGACTCTGAAAGAGGCTGTTCGAGAACTCTCACATTTGATCTGACCAAATACCGGGAGTCCTAA 3645 0.4148 MPSLLSPGKIHRLEMENFKSYKGFQVIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDREKEQKGRRAFVRLVYQLANNSEIQFTRTITAAGASEYRIDGNLVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKGAAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQEQLKSIKKEHFLWQLFNIENDIVKTTEDLEDEKKSREGVIEELEKFENEASKKKKEQAKYLKEIALREKRITEKSNKLDKSQPELLKLKEEMTRINSKIKKGKKELDKKREERRRHAADIAELQKGIQDLTAKMVDLQEKGRDVGDQLKLDSNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQKNLEENLQQLRNRESELNSQEEQMQARRKKILDNSAKNKDGLVNLKEELRTMQNKHHDSKEKYKNLKLKIDEVEKQLRELKADRYENERDAKLSQAVETLKRLFQGVHGRMTDLCRPTRKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIMERLRTLGAFELNECKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKIIEGLNKKKEQFESELEELGSIRDMQLKESEASGKISGLEKKIQYADIENRSIEDKLSNLSRDKENIKKEIERISPELQKLNGAIDKRNAELRKLEKRINEITDRIYKDFSKSVGVANIREYEEDRLKAAQNIAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELESSLSALENDLKRVQNKEAEAKLAAEKAMEEIDQFKEEAKEWKSKSEDCEKEIQDWKKKASAATTNISKLNRLINSKEAQIEQLMVQKQEILEKCELEQIILPTISDPMDSGSSAPGPVFDFDELGRVLKDRRHSDRNKIEVEFKQKMDSLIHEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKADRFNAVKQRRYELFMDAFNHISGIIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARASQDTDGGSGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES* 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01223 1214 SMART SMC_hinge_2 517 630 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Rops6g01223 1214 Coils Coil 170 190 - -
Rops6g01223 1214 Coils Coil 1004 1024 - -
Rops6g01223 1214 Coils Coil 251 285 - -
Rops6g01223 1214 Gene3D - 594 656 - -
Rops6g01223 1214 Coils Coil 454 502 - -
Rops6g01223 1214 Gene3D - 477 593 - -
Rops6g01223 1214 Pfam RecF/RecN/SMC N terminal domain 10 1195 IPR003395 -
Rops6g01223 1214 Coils Coil 198 231 - -
Rops6g01223 1214 Coils Coil 748 775 - -
Rops6g01223 1214 Coils Coil 672 692 - -
Rops6g01223 1214 Coils Coil 307 362 - -
Rops6g01223 1214 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1214 - -
Rops6g01223 1214 Coils Coil 789 809 - -
Rops6g01223 1214 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Rops6g01223 1214 Coils Coil 720 740 - -
Rops6g01223 1214 Gene3D - 935 1213 IPR027417 -
Rops6g01223 1214 Gene3D - 8 219 IPR027417 -
Rops6g01223 1214 PIRSF SMC 8 1211 IPR024704 GO:0005524|GO:0016887
Rops6g01223 1214 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Rops6g01223 1214 Coils Coil 405 442 - -
Rops6g01223 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1156 IPR027417 -
Rops6g01223 1214 Pfam SMC proteins Flexible Hinge Domain 517 629 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Rops6g01223 1214 SUPERFAMILY Smc hinge domain 481 678 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Rops6g01223 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 272 IPR027417 -
Rops6g01223 1214 Coils Coil 826 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01223 Rops-Chr6 27135085 27152488 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01223 8 114 Structural Maintenance of Chromosomes family AT5G61460 33.333 5.81e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01223 K06636 - gmx:100791953 1994.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01223 6 27135085 27152488 Rops6g01223 6 27135085 27152488 ECH