Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01219 ATGCATATAGGTCAACCGGATACAACCTCAGTGAGATGTCTAATCAACAGCATTTCTCGATTCATTCATCTAGTTTCTTGCCAAACAGTGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTTGGGGTGTTGAAATGTTTGAAGCCGGTGCTTGATGATGTTATGGATTACAGAATTCCTTTGGATGGAAATCTATGTAAAGAGTGTGAAGAATTGGATACACGGGTTAATGAAGCTAGAGATTTCATTGAGAAATGGGGTCCAAAGATGAGCAAGATTCACAGTGTTCTACAAAGTGGGACATTGTTGATTAAGTTACAGAGCACTTCACTTAATATTTGTCACATGATAGTTAAATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAATCTTCAGCACTATATCCAGGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAGAAGCACTGAGAAACCAAAGAGATAATATTGAACCTTGCAGTGAACATCTAAAGGGAATTATTGAGTTACTTACATTGACTTCAAACCAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCCGAGGTCAACAAAATGAAAGGGGACTTGGAAGAAATTAATGAAGTTGTGAATCTTGTCCGCAATTTACGTGATTATGTGATGACAACTGAGAGCCCTGTAGTCAAGAGTGGTATCTCAATCCCTCCATACTTCCGCTGTCCATTATCATTGGAACTCATGTTGGATCCTGTTATCGTGGCTTCAGGTCAAACATATGAGAGGCAATCCATCCAAAAGTGGCTTGATCATGGGCTGACTGTTTGTCCCAAGACTCGTCAGATACTTAATCATACAAATCTCACTCCCAATTATACTGTCAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTTCCAGTAACTCTGAGCACAATAATTCTGCCCGCATCACATCCCCTTCAGACCGTTTATTGCCTCAAGATTTAGCTCATGCATGTGGTGTTGGGTCTTTACCAAGTAGCAATTCAATTTCAAGATCATCTCTTCAAACCGGAAATGCATTTGAGAAACAAAAGGGTGATAACTCTTTCAGATTACATGGAGAATACAATGGATGCCAGAGTGGAGCAACAGAGAAGTGTGAGCAACAATCTCCATATATTCACAGCAGAAGTGATTCATTCTCAAGTTCAATTTCTAGTACTGATTGTGTACTTGCAGTTTCAAAAGAGGTGTCAGGGATATCCAATAAGCTTCAAAATGTGAAGGCATTGTCTGGAGAAATCATAAATGTGTGTCCTGCTTCTCCTTGTGATAAACAATTAGGGATATCTCCTCGGTCATCTGGAAAGCAATTTGAAAGCCCTGGATCAAATGTGGGAGGGATGGAAAATGGAAATTATAACAATAATAGTAATAGCAATAATATTCATGCAAGAGTTGATTCCCATCCTGTCTCCAACTCAGGATTAGATGAATTGACCACCTCATCTCATGTCAATAAATTGATTGAAGACCTCCACAGCCAATCAATTGAAGTGCAAACTACTGCTGCAGAAGAGTTGAGGCTCCTTACAAAGCATAACACGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTGTCATGCCTTTACTTTCACTGCTATATTTAGATGTGAAGATAACACAAGAGCATGCTGTGACAGCTCTGCTGAATTTGTCAATTAATGAAGATAACAAGGCGTTGATTATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTGAAGACAGGAAATGATAGGGCCAAGGAGAATTCTGCGGCAGCACTATTCAGCCTCTCTATAATGGAGAACAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTAGATCTTCTTGCCTCAGGAACTCTTAGAGGAAAGAAGGATGCTGCTACTGCTTTATTTAACCTTTCAATATTTCATGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTCAGTTGATGGACCCCGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAATCTGTCAACTATTCCAGAGGGCCGGTTAGAAATTGCAAGGGAAGGTGGTATCCCTTTACTGGTTGAAATTGTTGAATCAGGTACCCATAGGGGAAAGGAAAATGCTGCGTCCATTATCCTGCAATTATGCCTTCATAGTTCCAAGTTTTGTACTCTGGTTTTGCAAGAAGGAGCAGTACCTCCCCTAGTTGCATTGTCTCAATCTGGTACACCAAGAGCAAAGGAAAAGGCCCAACAGCTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGGCAAGGGAAAATCATGA 2388 0.4062 MHIGQPDTTSVRCLINSISRFIHLVSCQTVKPMPFQKICNNMVGVLKCLKPVLDDVMDYRIPLDGNLCKECEELDTRVNEARDFIEKWGPKMSKIHSVLQSGTLLIKLQSTSLNICHMIVKSLQSPPSASVLANLQHYIQELQCLKKETAMVYIEEALRNQRDNIEPCSEHLKGIIELLTLTSNQELLKESIAVEKERLNAEVNKMKGDLEEINEVVNLVRNLRDYVMTTESPVVKSGISIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQILNHTNLTPNYTVKAMIANWCEENNVKLSSNSEHNNSARITSPSDRLLPQDLAHACGVGSLPSSNSISRSSLQTGNAFEKQKGDNSFRLHGEYNGCQSGATEKCEQQSPYIHSRSDSFSSSISSTDCVLAVSKEVSGISNKLQNVKALSGEIINVCPASPCDKQLGISPRSSGKQFESPGSNVGGMENGNYNNNSNSNNIHARVDSHPVSNSGLDELTTSSHVNKLIEDLHSQSIEVQTTAAEELRLLTKHNTENRIIVGQCGAVMPLLSLLYLDVKITQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLKTGNDRAKENSAAALFSLSIMENNKAKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVQLMDPADGMVDKAVALLSNLSTIPEGRLEIAREGGIPLLVEIVESGTHRGKENAASIILQLCLHSSKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATGKGKS* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01219 795 Coils Coil 189 216 - -
Rops6g01219 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Rops6g01219 795 SMART arm_5 539 579 IPR000225 GO:0005515
Rops6g01219 795 SMART arm_5 702 742 IPR000225 GO:0005515
Rops6g01219 795 SMART arm_5 662 701 IPR000225 GO:0005515
Rops6g01219 795 SMART arm_5 580 620 IPR000225 GO:0005515
Rops6g01219 795 SMART arm_5 621 661 IPR000225 GO:0005515
Rops6g01219 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Rops6g01219 795 Pfam Armadillo/beta-catenin-like repeat 624 660 IPR000225 GO:0005515
Rops6g01219 795 Pfam Armadillo/beta-catenin-like repeat 580 619 IPR000225 GO:0005515
Rops6g01219 795 FunFam RING-type E3 ubiquitin transferase 238 314 - -
Rops6g01219 795 SUPERFAMILY RING/U-box 239 314 - -
Rops6g01219 795 PANTHER U BOX DOMAIN-CONTAINING 34 783 - -
Rops6g01219 795 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Rops6g01219 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 316 IPR013083 -
Rops6g01219 795 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Rops6g01219 795 Gene3D - 584 792 IPR011989 -
Rops6g01219 795 SUPERFAMILY ARM repeat 501 782 IPR016024 -
Rops6g01219 795 FunFam RING-type E3 ubiquitin transferase 494 788 - -
Rops6g01219 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Rops6g01219 795 CDD RING-Ubox_PUB 242 294 IPR045210 -
Rops6g01219 795 MobiDBLite consensus disorder prediction 454 502 - -
Rops6g01219 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Rops6g01219 795 Gene3D - 477 583 IPR011989 -
Rops6g01219 795 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01219 Rops-Chr6 27084395 27089872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01219 7 795 U-box Gene Family AT3G54790 53.692 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01219 - - gmx:100800949 1283.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01219 6 27084395 27089872 Rops6g01219 6 27084395 27089872 ECH