Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01217 ATGGGTCTTAGAGATGTTGGTGCTTCACTACCCCCTGGGTTCCGATTTTATCCGAGTGATGAGGAGTTGGTCCTTCATTACCTTTACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGACTTACACACATGCGAGCCGTGGCAACTTCCTGAGGTGGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCAACTGGTTTTCGGACCAATCGGGCCACGACATCTGGCTATTGGAAAGCAACAGGGAAGGATCGTACGGTGTTTGATCCAATCACGGGTGAGGTTGTAGGGATGAGGAAAACGTTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACGGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCCCCTAAGGAGGACTGGGTTTTGTGTAGAGTTTTTCACAAAGGCAAAGAAGACAACAGTAGTGCCGAACTCATGTTTGAAACCACAGCTCCATCCCTAAGTTTGGCTTCCTCATCCCCAACCAACCAAACCATGCCAGTTGGGTATAACCAACTTGCCCCATTCTCTTCCTCAATGGCAACCCATCACCTAAACCAGAACCAAAATAATTCTTTTATGAATCTCCTTCAGTTTTCTCGGGAAACAAACACCAACTGTTGTAGTGTTACTCAAATTGGTCCAAAATGTGACGATGGATATGGATTCTTATGGGACATGGATCTGGAAGAAAATAGCTTCCAAGATGGTGTGGACTCAAATTTGGATGGAATGAGATTCGAAGTTGATGATAACAGTATGATCTTGTCATAA 837 0.4492 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLVEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPITGEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKEDNSSAELMFETTAPSLSLASSSPTNQTMPVGYNQLAPFSSSMATHHLNQNQNNSFMNLLQFSRETNTNCCSVTQIGPKCDDGYGFLWDMDLEENSFQDGVDSNLDGMRFEVDDNSMILS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01217 278 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Rops6g01217 278 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 214 - -
Rops6g01217 278 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Rops6g01217 278 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Rops6g01217 278 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01217 Rops-Chr6 27015075 27020005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01217 6 159 NAC Transcription Factor Family AT1G56010 58.642 1.00e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops6g01217 NAM 1.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01217 - - gmx:100783645 478.018