Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01210 ATGATAATTTCAATGGAGGAAGATCAGGATCGAATTTTGCTCACTAGTTTGGGCGTAAAGTCTGCCAATCCTGAAGATATTGAACGCCACGTTTTGGAAAAGGCTAGGAATGATGCGGTGACCGTTACTGAAGCTGAAGAGAACACCAGGGAAGAATCTTCTCCTTTACCTGAAACTGTTGATCCATCATCTATTGCCAAAGCAGAACTCCATCAGAAGCTGAGGGCAGTAGAATTTGAAATAGGTGCAGTCTCTTCCACTATTCAACGCCCGAGAAATGTCGAAGATGGTGGGGAATGTAATGATGCTGGTGAGGATGGCTCGAAGCAAGGGATTGCCGAGGGTGATTCCTCTGATGGTTCAAACCTTCAGCACGTTCTTGCTGCCGATAGGCTGAGGAGCCTGAAGAACACAAAGGCTCAACTAGAGAAAGAGCTTTTGAAATTGTCTAAGGATGATGCTTCTAAAAATGTTGATCATGAAAAACTGATCTTTAGTTTAGTTAAGGAAGAAAGAAGACCCAAGAGGAAGCATAAAGAAGATAAGAAATCGCACAAAAGCGCAGGAAAGCGGATTAAGACAGTCTCATTTAATGACGATGATGATTTTGATGCTGTTCTGGATGCAGCCTCTGCAGGATTTGTTGAAACAGAAAGGGACGAATTGGTCAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGTTTTCAACAACCCGAAACATCAACTAGTCATAATGCAGCTGAGGAAGAAAATAACGTTGATCTTGCTTCTTCCAGTGTTGAAAGAGCTGCCAGATCAATGTCTGAGGCAGCAAGAGCTCGCCCAACCACCAAGCTGCTTGAGTCTAAAGATTTACCAAAGCTTGATGCACCCACTGTTCCTTTTCGCAGACTCAAGAAACCACTAAAATTTCCCAAACGACCAGACAGAGATGTGGAACTGAATAAAGATTCAAAAGGGAAAAAGAGGCGACCTTTGCCTGGGAGGAAATGGACCAAGCGTGTTTCTTGCGAGGATATACAGCTGGAAGAAAGTGAAAATGCAAATGGTTGCTTGGACATTTCCAGTTCTGAAAATTTAGAATCACAAGATGTCGAACTTGCTGAGCATGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATCCCCAATAACATATTTAATGCTCTGTTTGATTATCAAAAGGTTGGTGTTCAGTGGCTGTGGGAATTACATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTAGGTAAAACTGTCCAGGTCTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAACCCAGCATTGTTGTCTGTCCTGTCACACTCTTGCAACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCTAAATTCCATGTAGAACTTCTACATGATTCTGCTCAGGATTCCGCTCCTAGAAAGAAGCAAGCTAAATCCGATGAAGAAACTGACTGTGAAAGCAATAGTTCAAGTGACAATGATTATGAGAGAAGTGTACCATCTAGAAACCCAAGAAAATGGGAATCCTTAATAAATCGTGTTATAAGATCAGAATCTGGATTACTTATTACCACTTATGAGCAGCTCAGGATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAGGAATCCAAATGCTGAAATTACACTAGTTTGCAAACAGCTACAAACTGTACACCGCATCATAATGACTGGTGCACCTATTCAGAACAAACTGACTGAACTATGGTCATTGTTTGATTTTGTTTTTCCTGGAAAATTGGGTGTTTTACCCATATTTGAAGCTGAATTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTCCGACGTATGAAGGCTGATGTAAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTATTTTGCAGCCTTACATCGGAGCAGGTATCTGCTTATAGAGCATTTTTAGCAAGCACTGAAGTGGAGGAAATATTCGATGGACACAGGAATTCTCTTTATGGAATTGATGTGATGCGCAAGATCTGCAATCACCCTGACCTACTTGAGAGGGAACATGCCTTCAAGAATCCAGATTATGGAAATCCAGAACGCAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTCCTTTTTACTCAAACCCTACAAATGCTTGACATTTTTGAGAATTTTTTGACTACTTCTGGTTTTATTTACCGGAGAATGGATGGTCTCACTCCCATAAAACAGAGAATGGCTTTAATAGATGAATTTAATGCCACCAGTGAAGTATTTATTTTCATTTTAACAACCAAAGTTGGGGGTTTGGGGACAAATCTTACCGGTGCTAATAGGGTGATCATCTTTGACCCTGACTGGAATCCTTCAACTGATATGCAGGCCAGAGAGCGTGCTTGGCGCATTGGTCAGAAACGGGATGTGACAGTGTATAGGTTGATCACACGTGGAACTATAGAGGAGAAAGTGTATCACCGTCAAATTTACAAACATTTTCTTACCAATAAGATATTGAAGAACCCACAACAGAGAAGGTTCTTTAAAGCCCGGGATATGAAAGACCTTTTCACACTGAATGTGGATGGAGAAACTGGGTCAACTGAAACGTCAAATATTTTCAGTCAAGTATCTGAAGAAGTAAATGTTGTTGGGACACGTAAAGATAATCAGGATAAGCATAAAAATAGTCAAACTGCTGAACCAGGTTCTGAAGATGATGCAGTTGGTACTGATGGCAAATCATTGAGAGGATCTTCAAGGGGAAAAGGGAAAGAGAAGGTTGAACATAGTGATGGGGCTGATGAGGAAACAAATATATTGAAAAGTCTTATTGATGCCAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCCATGATGAGGAGAAGATGAGACTTGAGGAGCAAGCTTCCCAGGTTGCGCAAAGAGCTGCAGAAGCTTTACGTCAGTCACGAATGCTCCGAAGCCATGATTGCATATCTGTTCCAACATGGACAGGAAGGTCAGGAACTGCTGGTGCTCCTTCATCTGTTCGACGGAAGTTTGGTTCAACTGTGAATTCCCAGTTGGTAAATAATTGCAAAGCATCTGATGAATTACCAAGCAACGGATCTAACAAATTCAATGGATTTGCTGCTGGTGCATCTTCTGGTAAGGCATTATCTTCAGCTGAACTATTAGCTAAAATTCAAGGTAACCAAGAAAAAGCCATTGGTGCTGGGCTTGAGCATCAGTTTGGCATGTCATCAAGTTCCACTAATCAATCAAGATCTATAGATGTAAAATCTTCTAGGGCTACTGAAAATTCATCTGGATTGCAACCTGAAGTATTGATTCGGAAAATCTGTACTTTTCTACAACAGCGAGGTGGGAGTTCCAGTTCAGCCAGCATAGTTCAGTATTTCAAGGACAGTATTCCCTCAAAAGATCTTGCCCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCAGAAAGGATCAGACGGATCCTACTGGGTTCTGAAGCCTGACTATCAAGTATAG 3690 0.4141 MIISMEEDQDRILLTSLGVKSANPEDIERHVLEKARNDAVTVTEAEENTREESSPLPETVDPSSIAKAELHQKLRAVEFEIGAVSSTIQRPRNVEDGGECNDAGEDGSKQGIAEGDSSDGSNLQHVLAADRLRSLKNTKAQLEKELLKLSKDDASKNVDHEKLIFSLVKEERRPKRKHKEDKKSHKSAGKRIKTVSFNDDDDFDAVLDAASAGFVETERDELVRKGILTPFHKLKGFERRFQQPETSTSHNAAEEENNVDLASSSVERAARSMSEAARARPTTKLLESKDLPKLDAPTVPFRRLKKPLKFPKRPDRDVELNKDSKGKKRRPLPGRKWTKRVSCEDIQLEESENANGCLDISSSENLESQDVELAEHESSYVTLEGGLKIPNNIFNALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIVVCPVTLLQQWKREAKKWYPKFHVELLHDSAQDSAPRKKQAKSDEETDCESNSSSDNDYERSVPSRNPRKWESLINRVIRSESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPIFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEIFDGHRNSLYGIDVMRKICNHPDLLEREHAFKNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTLQMLDIFENFLTTSGFIYRRMDGLTPIKQRMALIDEFNATSEVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFTLNVDGETGSTETSNIFSQVSEEVNVVGTRKDNQDKHKNSQTAEPGSEDDAVGTDGKSLRGSSRGKGKEKVEHSDGADEETNILKSLIDANGIHSAMNHDLIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSHDCISVPTWTGRSGTAGAPSSVRRKFGSTVNSQLVNNCKASDELPSNGSNKFNGFAAGASSGKALSSAELLAKIQGNQEKAIGAGLEHQFGMSSSSTNQSRSIDVKSSRATENSSGLQPEVLIRKICTFLQQRGGSSSSASIVQYFKDSIPSKDLALFKNLLKEIATLQKGSDGSYWVLKPDYQV* 1230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01210 1229 MobiDBLite consensus disorder prediction 1132 1156 - -
Rops6g01210 1229 Pfam SNF2-related domain 400 723 IPR000330 GO:0005524|GO:0140658
Rops6g01210 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 920 IPR027417 -
Rops6g01210 1229 Coils Coil 32 52 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 170 190 - -
Rops6g01210 1229 Coils Coil 1011 1038 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 482 498 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 1133 1156 - -
Rops6g01210 1229 CDD DEXHc_ERCC6 397 608 - -
Rops6g01210 1229 Gene3D - 367 658 IPR038718 -
Rops6g01210 1229 Gene3D - 665 955 IPR027417 -
Rops6g01210 1229 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 409 609 IPR014001 -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 240 336 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 88 121 - -
Rops6g01210 1229 FunFam DNA excision repair protein ERCC-6 666 946 - -
Rops6g01210 1229 CDD SF2_C_SNF 741 866 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 482 515 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 38 54 - -
Rops6g01210 1229 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 746 905 IPR001650 -
Rops6g01210 1229 SMART ultradead3 393 626 IPR014001 -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 936 986 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 310 327 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 241 270 - -
Rops6g01210 1229 SMART helicmild6 772 855 IPR001650 -
Rops6g01210 1229 PANTHER SNF2/RAD54 FAMILY MEMBER 160 1210 - -
Rops6g01210 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 659 IPR027417 -
Rops6g01210 1229 CDD CSB_WHD 1162 1228 - -
Rops6g01210 1229 FunFam Protein CHROMATIN REMODELING 8 375 658 - -
Rops6g01210 1229 MobiDBLite consensus disorder prediction 38 63 - -
Rops6g01210 1229 Coils Coil 125 152 - -
Rops6g01210 1229 Pfam Helicase conserved C-terminal domain 748 855 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01210 Rops-Chr6 26920818 26927699 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01210 390 908 RAD5 or RAD16-like Gene Family AT1G02670 23.500 3.44e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops6g01210 SNF2_N 2.8e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01210 K10841 - gmx:100820025 1996.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01210 6 26920818 26927699 Rops6g01210 6 26920818 26927699 ECH