Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01209 ATGGCGAGAGAAGTAGAAGAGAAAGAAGATTCCAGAGGAATCCAAGTCCGTGGCATGCAATTCTCCTACGATGTACAACAACCACCACTCTTCCTCGAATTCAACCTTGACGTTTCTCCTGGATCGCGATGCCTCCTTGTCGGTGCCAACGGATCCGGTAAGACGACTTTGCTGAAGATTCTAGCAGGGAAGCACATGGTTGGAGGAAGAGACGTTGTGCGTGTGTTGAATTGTTCCGCTTTTCACGACACTCAACTCGTTTGTGGCGGTGATCTCGGTTACTTGGGCGGTTCATGGAGTAAAAACGTTGGCTCCGCTGGAGAAATTCCACTCCAAGGAGACTTCTCTGCTGAACATATGATCTTTGGAGTTGAGGGCACTGATCCTGAGAGGAGAGATAGGTTGATTGAGCTGCTTGATATAGATCTGCAGTGGCGAATGCATAAGGTATCTGATGGGCAGCGACGTCGAGTGCAAATTTGTCTTGGTCTTCTTCATCCATTTAAGGTTCTCTTGCTGGATGAGGTTACTGTTGACCTGGATGTTGTTACTCGGATGGATTTATTGGACTTCTTTAGGGAAGAATGTGAACAGAGAGAAGCCACAATTGTATATGCAACTCACATTTTTGATGGACTAGAGACATGGGCAACGCATTTGGCATACATACAAGATGGTGAACTGAGGAGAGCAGAAAAATTATCAGATGTTAACGAGTTGAAGTCTTCAACTAATCTGCTGTCTGTTGTTGAGTCCTGGCTCCGTGCTGAAACAAAGCTAGAAAAGAAGAAACCTGTCCCCAATACTTCTTTTGCTAGCTCTCCATTCTTTTCATCCAGACACATGGCATACTATAGATAG 861 0.4541 MAREVEEKEDSRGIQVRGMQFSYDVQQPPLFLEFNLDVSPGSRCLLVGANGSGKTTLLKILAGKHMVGGRDVVRVLNCSAFHDTQLVCGGDLGYLGGSWSKNVGSAGEIPLQGDFSAEHMIFGVEGTDPERRDRLIELLDIDLQWRMHKVSDGQRRRVQICLGLLHPFKVLLLDEVTVDLDVVTRMDLLDFFREECEQREATIVYATHIFDGLETWATHLAYIQDGELRRAEKLSDVNELKSSTNLLSVVESWLRAETKLEKKKPVPNTSFASSPFFSSRHMAYYR* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01209 286 SMART AAA_5 40 227 IPR003593 GO:0016887
Rops6g01209 286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 14 250 IPR003439 GO:0005524
Rops6g01209 286 Gene3D - 11 264 IPR027417 -
Rops6g01209 286 Pfam ABC transporter 34 177 IPR003439 GO:0005524
Rops6g01209 286 PANTHER SKFA PEPTIDE EXPORT ATP-BINDING PROTEIN SKFE 14 251 - -
Rops6g01209 286 FunFam ABC transporter I family member 21 115 281 - -
Rops6g01209 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 239 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01209 Rops-Chr6 26914157 26917609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01209 14 242 Calmodulin-binding Proteins AT2G36910 23.387 2.97e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01209 K12608 - gmx:100788503 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01209 6 26914157 26917609 Rops6g01209 6 26914157 26917609 ECH