Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01208 ATGGATTCTGCAAGGAGTTGGCTTCATAAGTTTCAGCCTCGGGATAAAATGAGGGGGGCTGCAAGGAAGAGAGAGGAAGATGGTAATGGGGGAAATCAAGATTTGAATGCACCGATGGATGAAGCGTCTCTTTCTAATGACACGAAGCAGAAGGTTGCAGCGGCAAAGCAGTATATTGAAAATCATTACAAGGAGCAAATGAAGAACCTTCAGGATAGGAAAGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAAGAGGATCAAAACAATCTGCTCAAGTTTTTAGAGAAAAAGGAAACTGAATACATGCGCCTTCAGAGACACAAGATGGGTGTTGATGATTTTGAGTTACTGACTATGATCGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGTAGGGAGAAGACTACTGGTCATGTATATGCAATGAAAAAGTTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTCAGAGCAGAAAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATCGTCAAACTTTATTATTCTTTCCAGGATGATGAGTATCTGTATCTTATTATGGAGTATCTCCCAGGTGGGGATATGATGACTCTACTTATGAGAAAGGATACCTTGACTGAAGATGAAGCCAAATTTTATGTGGCAGAAACAGTTCTGGCCATTGAATCTATACATAAACACAACTATATACATAGGGATATCAAACCCGACAACTTATTACTTGATAAATACGGGCACTTGAAACTGTCAGATTTTGGACTTTGCAAACCACTAGATTGCAGTACACTTGAAGAAAAGGATTTTTCTATGGGTCAGAATGCGAATGGATCTACACAGAATGATGAGCGTGCAGCTCCAAAACGCACACAACAAGAACAACTGCAACACTGGCAAAAGAACAGGAGGACACTTGCTTATTCCACAGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTTTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTGAACTGGAAAACTCACTTGAAATTTCCTGAAGAAGCTAGGCTGTCCCCAGAGGCTAAAGATCTTATAAGTAGACTTTTGTGTAATGTCAACCAGAGGCTGGGGTCAAAAGGAGCAGATGAAATAAAGGCTAATCCATTCTTCGAAGGTGTTGAATGGGATAAGCTGTATCTAATGGACGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTGAAAAGTTTGATGAGGCTGACATCCAAGCTCAATCATCATCAAGAGCTAGTCCATGGAGGAAGATGCTTTCGTCTAAGGATGTGAATTTTGTTGGATACACATACAAGAACTTTGAAATTATCAACGATTATCAAGTTCCTGGGATGGCTGAACTGAGGAAGAAACCCTCCAAATCAAAGAGGCCATCCGTCAAGTCACTTTTCGATTCTGAGTCAGAGACATCAGAGGTGTGTGAGGTTTCTGATAAAGCTGCAAGTGATCCACCTGCTCAAGGAAGTTTTCTAAACCTCTTGCCACCCCGATTAGAGAAAATGAGATAA 1662 0.4103 MDSARSWLHKFQPRDKMRGAARKREEDGNGGNQDLNAPMDEASLSNDTKQKVAAAKQYIENHYKEQMKNLQDRKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYYSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEAKFYVAETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLKLSDFGLCKPLDCSTLEEKDFSMGQNANGSTQNDERAAPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPEEARLSPEAKDLISRLLCNVNQRLGSKGADEIKANPFFEGVEWDKLYLMDAAFIPEVNDELDTQNFEKFDEADIQAQSSSRASPWRKMLSSKDVNFVGYTYKNFEIINDYQVPGMAELRKKPSKSKRPSVKSLFDSESETSEVCEVSDKAASDPPAQGSFLNLLPPRLEKMR* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01208 553 Gene3D Phosphorylase Kinase; domain 1 119 448 - -
Rops6g01208 553 SMART pkinase_C_6 420 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Rops6g01208 553 SUPERFAMILY Protein kinase-like (PK-like) 94 472 IPR011009 -
Rops6g01208 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 471 - -
Rops6g01208 553 FunFam Non-specific serine/threonine protein kinase 205 272 - -
Rops6g01208 553 FunFam Non-specific serine/threonine protein kinase 318 437 - -
Rops6g01208 553 FunFam Non-specific serine/threonine protein kinase 92 204 - -
Rops6g01208 553 Pfam Protein kinase domain 122 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01208 553 MobiDBLite consensus disorder prediction 500 553 - -
Rops6g01208 553 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674|GO:0005524|GO:0006468
Rops6g01208 553 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Rops6g01208 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Rops6g01208 553 Gene3D Transferase(Phosphotransferase) domain 1 205 437 - -
Rops6g01208 553 CDD STKc_NDR_like 119 483 - -
Rops6g01208 553 SMART serkin_6 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01208 553 ProSiteProfiles Protein kinase domain profile. 121 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g01208 553 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Rops6g01208 553 MobiDBLite consensus disorder prediction 500 514 - -
Rops6g01208 553 MobiDBLite consensus disorder prediction 280 303 - -
Rops6g01208 553 CDD MobB_NDR_LATS-like 55 116 - -
Rops6g01208 553 MobiDBLite consensus disorder prediction 1 50 - -
Rops6g01208 553 MobiDBLite consensus disorder prediction 36 50 - -
Rops6g01208 553 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01208 Rops-Chr6 26900592 26910198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01208 1 518 AGC Kinase Gene Family AT2G20470 78.897 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Rops6g01208 Pkinase 2.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01208 K08790 - gmx:100820558 979.548