Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01205 ATGATGAAAGTGGGATTTGAGGTCCTTCATGCAAATACAAACATGATTCGTCCCCACATGCATGGAACTTGGGACTACCCAAATATTGCTGACTTGTCAGCTCCAACCCAATCAAACCCATATCCAAAGCCAGCAATTGAAAACCATTACCTAAACTTTGGGCAGAATGAGGTGTGTGATTGGGTGGAACACATTACAAAGCACTTTGTTGAAGACTTACCAGAAACCATTGCTGATAGCTTGCTAGCCAATAACCCAACAATGGCTTCTTCTTCTTCCCAAGACAACCTTGTTCCTTCACTTCCACCCAACTTCAATCCAAGAAAATCCACATTTGTCTCCTTCGCCAACAACCCCCCAAGCAGCAATAATTTCAATCTTCACATTCAAACAAACACCTTAGATTTAGATCATAATAACCATAATGTTTATGATCATGGGTTGAGCCTGATAACCCTTCTAATGGAGTGTGCAGTGGCAATCTCTGTTGACAACCTCAGTGAGGCTCACAGGATGTTACTTGAGCTAACACAAGTGGCCTCACCCTACAAGGCATCATGTGCTGAACGTGTTGTTGCCTATTTTGCAAAGGCCATGGCTAGCAGAGTGATGAATTCTTGGCTTGGTGTATGTTCCCCTTTGGTTGATCACAAGAACATTCACTCAGCATTCCAAGTGTTCAATAACATTTCCCCTTTCATCAAATTTGCTCATTTCACTTCAAACCAAGCCATCCTTGAAGCAGTGAACCGTTGCAACAGCATTCACATCATTGACATGGACATCATGCAAGGGCTGCAATGGCCACCCTTTTTCCACATACTAGCAACCCGAATGGAGGGTCCACCAGAGATCCAAATGACAGGCATGGGAACCTCAATGGAACTCCTTGTTGAAACTGGAAAGCAACTCTCCAACTTTGCAAGAAGGTTAGGCATATCCTTGAAGTTCCACCCAATTGCAACCAAGTTTGGGGAAGTTGATGTTTCCATGGTGCAAGTAAAACCTGGTGAGACACTTGCAGTGCATTGGTTGCAACACTCACTGTATGATGCAACTGGACCTGATTGGAAAACGTTAAAACTTCTTGAGGAGTTGGAGCCAAGAATCATCACTTTGGTAGAGCAAGATGTTAACCATGGAGGGTCTTTCTTGGACCGTTTTGTTAGCTCCTTACACTACTACTCTACCCTTTTTGATTCTCTTGGAGCATATTTACACAGTGACGATGCTAGCAGGAACCGTGTTGAGCATGACCTTCTTTCTAGGGAGATCAACAGTATATTGGCCATAGGAGGCCCTGCAAGGAGTGGTGAGGACAAGTTTAGGCAATGGAGAAGTGAGCTTGCAAGGCATAGTTTTGTGCAACTTCCAATGAGTGCAAATTCAATGGCTCAAGCACAGTTGATACTCAACATGTTTTCACCAGCTCATGGATATAGCCTTGCTGAAGTTGGTGGCACATTAAGGCTTGGATGGAAGGATACTAGCTTGTATACAGCTTCTGCATGGACCTGTAGTACTTCTAGGTAG 1533 0.439 MMKVGFEVLHANTNMIRPHMHGTWDYPNIADLSAPTQSNPYPKPAIENHYLNFGQNEVCDWVEHITKHFVEDLPETIADSLLANNPTMASSSSQDNLVPSLPPNFNPRKSTFVSFANNPPSSNNFNLHIQTNTLDLDHNNHNVYDHGLSLITLLMECAVAISVDNLSEAHRMLLELTQVASPYKASCAERVVAYFAKAMASRVMNSWLGVCSPLVDHKNIHSAFQVFNNISPFIKFAHFTSNQAILEAVNRCNSIHIIDMDIMQGLQWPPFFHILATRMEGPPEIQMTGMGTSMELLVETGKQLSNFARRLGISLKFHPIATKFGEVDVSMVQVKPGETLAVHWLQHSLYDATGPDWKTLKLLEELEPRIITLVEQDVNHGGSFLDRFVSSLHYYSTLFDSLGAYLHSDDASRNRVEHDLLSREINSILAIGGPARSGEDKFRQWRSELARHSFVQLPMSANSMAQAQLILNMFSPAHGYSLAEVGGTLRLGWKDTSLYTASAWTCSTSR* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01205 510 Pfam GRAS domain family 150 505 IPR005202 -
Rops6g01205 510 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 113 501 IPR005202 -
Rops6g01205 510 ProSiteProfiles GRAS family profile. 141 505 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01205 Rops-Chr6 26895577 26896119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01205 129 505 GRAS Transcription Factor Family AT3G54220 52.051 1.04e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops6g01205 GRAS 1e-104 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01205 - - gmx:100775656 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01205 6 26895577 26896119 Rops6g01205 6 26895577 26896119 ECH